RetrogeneDB ID: | retro_ecab_786 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 4:45063802..45064599(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010030 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.33 % |
Parental protein coverage: | 90.72 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | NLPDKVFKQKV-KLLTDLGRRMDEHSENFNKELENIKK-QSEMKNTIMEMKNSLEGLNSRVDDTEERISK |
NL.DK..K..V...L.DLGRRMDEHSENFNKELENIKK.QSE.KNTIME.KN.LEG..SR.DDTEE.IS. | |
Retrocopy | NLTDKEDKLIVIGMLNDLGRRMDEHSENFNKELENIKKNQSELKNTIMETKNLLEGISSRGDDTEEWIST |
Parental | LDERLEEVTQAEQIKEK-MKKTDSLRDLWDNIKCTKIRITGVPE-EEGDKGAEIYLIK-IAENFPKLQKE |
LD.RLEE.TQAE..KE...K..DSL.DL.DNIK...I...GVPE.EE.DKGAE......IAENFP...KE | |
Retrocopy | LDKRLEEITQAEWKKEL<KKNEDSLGDL*DNIKHINIHSIGVPEGEERDKGAENKFEEIIAENFPNQRKE |
Parental | ADFQVQEAQNAPNRINPKRHTPRHIINKISNPGRNKERILKAARERQQVTYKGNSIRLSADLSAETLQAR |
.D.QVQE.Q.APN..NPK...PR.II.K.S...R...R......E......K....RLSAD.SAETLQAR | |
Retrocopy | TDIQVQEEQRAPNKMNPKSPKPRRIIIKLS---RIQDRES*KLQEKGNKSQKKPHTRLSADFSAETLQAR |
Parental | RKWHSIFKVLNRKK-PPRILYLARSSFIMEGEIKCFPDKQKLKEFITKKPALQEMLKGLI |
R.W..IFKVL..K...P.ILY.AR.SF..EGEIK.FPDKQKL..FIT.KPAL.EMLKGLI | |
Retrocopy | REWSDIFKVLKGKNVQPTILYSARLSFRTEGEIKSFPDKQKLQDFITNKPALLEMLKGLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .00 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .03 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .00 RPM |
SRP021940_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000010030 | 21 retrocopies |
retro_ecab_1021, retro_ecab_1023, retro_ecab_1035, retro_ecab_1071, retro_ecab_1089, retro_ecab_136, retro_ecab_182, retro_ecab_201, retro_ecab_281, retro_ecab_306, retro_ecab_486, retro_ecab_521, retro_ecab_537, retro_ecab_582, retro_ecab_590, retro_ecab_658, retro_ecab_670, retro_ecab_722, retro_ecab_786 , retro_ecab_974, retro_ecab_996,
|
Equus caballus | ENSECAG00000016527 | 5 retrocopies | |
Equus caballus | ENSECAG00000020332 | 9 retrocopies | |
Equus caballus | ENSECAG00000022034 | 4 retrocopies | |
Equus caballus | ENSECAG00000023806 | 15 retrocopies |