RetrogeneDB ID: | retro_ecab_781 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 4:29682236..29683080(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000023806 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.54 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MRRQRNMFHARVQDKTPEKELNETQRDNLPDKEFKQKGIRMLIDLGRRMDKHSENVNKELENIKKSQSEM |
MRRQRN.F......K..E.ELNET...NLPDKE.K...IRML.D.G.RM...SEN.NKELENIKKSQSE. | |
Retrocopy | MRRQRNVFKIGKYEKSSERELNETKINNLPDKEYKLIVIRMLTDFGKRMNEYSENFNKELENIKKSQSEL |
Parental | KSTILKMKNSLEGLNSRVDDTEEWIKKLDEKLEEISQ-VNQVKEKTILKNDSKIKELWDNIKHANIRIIS |
K..I..MKNSLEG.NSRVDDT.EWI..L.E..E.I.Q..N......I.KN......LWDNIKH.NI.I.. | |
Retrocopy | KNIIIEMKNSLEGINSRVDDT*EWISELGERIEGITQ>LNXXXXXXIKKNEDGLRDLWDNIKHINIHITG |
Parental | VPGGEERHKGEENLFEEIIDENFPNLRKETDIQVQEEQRAPNKSSPKRPTPIHIIIKMSKIKDKERILKA |
VP.GEER.KG...LF.EII.E.FP.L.KETDIQVQE.....NK..PKRP.P.HIIIKMS.IKDKE.ILKA | |
Retrocopy | VPEGEERKKGAAILFKEIIVEYFPDLKKETDIQVQEV*KTLNKINPKRPKPRHIIIKMSRIKDKESILKA |
Parental | ARERPEVTYKGKPIRLSADFSAETLQATREWHDIFKVLKGKNLQPRIFYPSRSSFRMEGEIKRFPDKQNV |
A.ER...TYK..PIRLSADFS.ET.QA.RE....FKVLKGKNLQPRI.YP.R.SFRME.EIK.FPD.... | |
Retrocopy | AKERQQATYKRNPIRLSADFSEETFQARRESQNTFKVLKGKNLQPRILYPARLSFRMEREIKSFPD**KL |
Parental | KE |
KE | |
Retrocopy | KE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .12 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .28 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .08 RPM |
SRP021940_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000010030 | 21 retrocopies |
retro_ecab_1021, retro_ecab_1023, retro_ecab_1035, retro_ecab_1071, retro_ecab_1089, retro_ecab_136, retro_ecab_182, retro_ecab_201, retro_ecab_281, retro_ecab_306, retro_ecab_486, retro_ecab_521, retro_ecab_537, retro_ecab_582, retro_ecab_590, retro_ecab_658, retro_ecab_670, retro_ecab_722, retro_ecab_786, retro_ecab_974, retro_ecab_996,
|
Equus caballus | ENSECAG00000016527 | 5 retrocopies | |
Equus caballus | ENSECAG00000020332 | 9 retrocopies | |
Equus caballus | ENSECAG00000022034 | 4 retrocopies | |
Equus caballus | ENSECAG00000023806 | 15 retrocopies |