RetrogeneDB ID: | retro_ecab_281 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 13:26216920..26217613(+) | ||
Located in intron of: | ENSECAG00000022632 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010030 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.82 % |
Parental protein coverage: | 79.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | ENIKKQSEMKNTIMEMKNSLEGLNSRVDDTEERISKLDERLEEVTQAEQIKEKMK-KTDSLRDLWDNIKC |
E.I.....MKN...EMK.SLEGLN...DD.EERIS.LDERLE...QAE.IK.K.K.K.DSLRD.WDNIKC | |
Retrocopy | EPIRNEYWMKNEVLEMKDSLEGLNIKIDDMEERISELDERLEDIIQAEKIK-KFK>KEDSLRDPWDNIKC |
Parental | TKIRITGVPEEEGDKGAE-IYLIKIAENFPKLQKEADFQVQEAQNAPNRINPK-RHTPRHIINKISNPGR |
T.I.I.GVP.EE...G.E......IAENFP.L.KE.DFQVQE.Q.APN.IN.K.R.TPRHI..K.S.... | |
Retrocopy | TNIHIIGVPGEERQRGRE>LFEEIIAENFPNLRKETDFQVQETQRAPNKINSK<RPTPRHIVIKMSKI-K |
Parental | NKERILKAARERQQV-TYKGNSIRLSADLSAETLQARRKWHSIFKVLNRKK-PPRILYLARSSFIMEGEI |
.KE.I.KAARE.....TYKGN.IRL.ADLSAETLQARR.WH.IFK.L..K...PRILY.A.....MEGEI | |
Retrocopy | DKEEITKAAREGHKL<TYKGNHIRLLADLSAETLQARREWHDIFKALKEKNVQPRILYPAKLPLGMEGEI |
Parental | KCFPDKQKLKEFITKKPALQEMLKGLI |
K.FPDKQKLKEFITKKPALQ..LKGLI | |
Retrocopy | KTFPDKQKLKEFITKKPALQDVLKGLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .00 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .03 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .00 RPM |
SRP021940_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000010030 | 21 retrocopies |
retro_ecab_1021, retro_ecab_1023, retro_ecab_1035, retro_ecab_1071, retro_ecab_1089, retro_ecab_136, retro_ecab_182, retro_ecab_201, retro_ecab_281 , retro_ecab_306, retro_ecab_486, retro_ecab_521, retro_ecab_537, retro_ecab_582, retro_ecab_590, retro_ecab_658, retro_ecab_670, retro_ecab_722, retro_ecab_786, retro_ecab_974, retro_ecab_996,
|
Equus caballus | ENSECAG00000016527 | 5 retrocopies | |
Equus caballus | ENSECAG00000020332 | 9 retrocopies | |
Equus caballus | ENSECAG00000022034 | 4 retrocopies | |
Equus caballus | ENSECAG00000023806 | 15 retrocopies |