Parental gene: | ENSECAG00000023806 |
| Aliases: | None |
| Description: | None |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 22:537785..541259(-) |
>ENSECAG00000023806
ATGAGGAGGCAGAGGAATATGTTCCACGCAAGAGTACAGGACAAAACCCCAGAAAAAGAACTAAATGAAACACAAAGAGA
CAATCTACCTGATAAAGAGTTTAAGCAAAAAGGTATAAGGATGCTCATTGATCTTGGGAGAAGAATGGATAAACACAGTG
AGAATGTCAACAAAGAATTGGAAAATATAAAAAAGAGCCAATCAGAAATGAAGAGTACAATACTGAAAATGAAAAATTCA
CTAGAGGGACTCAACAGCAGAGTAGATGATACAGAAGAATGGATAAAAAAGCTGGATGAAAAACTAGAGGAAATCAGCCA
AGTTAATCAGGTAAAAGAAAAAACAATTCTAAAGAATGACAGCAAGATAAAGGAACTCTGGGACAATATCAAGCATGCTA
ACATTCGGATTATAAGTGTCCCAGGAGGAGAAGAAAGACACAAAGGGGAAGAAAATTTATTTGAAGAAATAATAGATGAA
AATTTTCCTAACCTAAGGAAGGAAACCGACATCCAAGTACAGGAAGAACAGAGAGCTCCAAACAAGTCAAGTCCAAAGAG
GCCCACACCAATACATATTATAATTAAAATGTCCAAAATTAAAGATAAAGAGAGAATCCTAAAAGCAGCGAGAGAAAGGC
CAGAAGTGACATACAAAGGGAAGCCCATAAGGCTATCAGCAGACTTCTCAGCTGAGACCCTACAGGCGACAAGAGAATGG
CATGATATATTTAAAGTTCTAAAAGGAAAAAACCTACAGCCAAGAATATTCTATCCATCAAGGTCGTCATTCAGAATGGA
AGGAGAGATAAAGAGGTTCCCAGACAAGCAAAATGTAAAGGAG
ATGAGGAGGCAGAGGAATATGTTCCACGCAAGAGTACAGGACAAAACCCCAGAAAAAGAACTAAATGAAACACAAAGAGA
CAATCTACCTGATAAAGAGTTTAAGCAAAAAGGTATAAGGATGCTCATTGATCTTGGGAGAAGAATGGATAAACACAGTG
AGAATGTCAACAAAGAATTGGAAAATATAAAAAAGAGCCAATCAGAAATGAAGAGTACAATACTGAAAATGAAAAATTCA
CTAGAGGGACTCAACAGCAGAGTAGATGATACAGAAGAATGGATAAAAAAGCTGGATGAAAAACTAGAGGAAATCAGCCA
AGTTAATCAGGTAAAAGAAAAAACAATTCTAAAGAATGACAGCAAGATAAAGGAACTCTGGGACAATATCAAGCATGCTA
ACATTCGGATTATAAGTGTCCCAGGAGGAGAAGAAAGACACAAAGGGGAAGAAAATTTATTTGAAGAAATAATAGATGAA
AATTTTCCTAACCTAAGGAAGGAAACCGACATCCAAGTACAGGAAGAACAGAGAGCTCCAAACAAGTCAAGTCCAAAGAG
GCCCACACCAATACATATTATAATTAAAATGTCCAAAATTAAAGATAAAGAGAGAATCCTAAAAGCAGCGAGAGAAAGGC
CAGAAGTGACATACAAAGGGAAGCCCATAAGGCTATCAGCAGACTTCTCAGCTGAGACCCTACAGGCGACAAGAGAATGG
CATGATATATTTAAAGTTCTAAAAGGAAAAAACCTACAGCCAAGAATATTCTATCCATCAAGGTCGTCATTCAGAATGGA
AGGAGAGATAAAGAGGTTCCCAGACAAGCAAAATGTAAAGGAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 0 .08 RPM |
| SRP021940_embryo | 0 .28 RPM |
| SRP021940_cerebellum | 0 .00 RPM |
| SRP021940_testis | 0 .00 RPM |
| SRP021940_placental_villous | 0 .00 RPM |
| SRP021940_articular_cartilage | 0 .12 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Equus caballus | ENSECAG00000010030 | within_species_paralog | 21 retrogenes |
retro_ecab_1021, retro_ecab_1023, retro_ecab_1035, retro_ecab_1071, retro_ecab_1089, retro_ecab_136, retro_ecab_182, retro_ecab_201, retro_ecab_281, retro_ecab_306, retro_ecab_486, retro_ecab_521, retro_ecab_537, retro_ecab_582, retro_ecab_590, retro_ecab_658, retro_ecab_670, retro_ecab_722, retro_ecab_786, retro_ecab_974, retro_ecab_996,
|
| Equus caballus | ENSECAG00000016527 | within_species_paralog | 5 retrogenes | |
| Equus caballus | ENSECAG00000020332 | within_species_paralog | 9 retrogenes | |
| Equus caballus | ENSECAG00000022034 | within_species_paralog | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_176 | 64.93 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_241 | 67.61 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ecab_298 | 58.60 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ecab_339 | 67.49 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ecab_714 | 58.78 | 97.86 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ecab_778 | 70.18 | 96.09 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ecab_781 | 64.54 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ecab_852 | 75.51 | 86.12 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ecab_855 | 73.89 | 71.53 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_ecab_953 | 63.90 | 72.60 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_ecab_1040 | 58.69 | 74.73 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_ecab_1050 | 68.63 | 53.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_ecab_1073 | 61.35 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_ecab_1077 | 60.73 | 86.83 | Please wait, loading | Please wait, loading | Please wait, loading |
| 15. | retro_ecab_1108 | 67.72 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000023806 retrocopies