Parental gene: | ENSECAG00000020332 |
| Aliases: | None |
| Description: | None |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 14:15536804..15546063(+) |
>ENSECAG00000020332
GAGATTAACACTATAAAGAAAAACCAATCAAAAACGTTGGAGATGAAAAACACAATGGATGAGGTAAAGAAAAATCTGGG
CTCCGTGAATAACAGAGCTGATATTATAGAGGAGACAATTAGTAGTCTGGAAGACAGAAATATAGAAATACTTCAGATAG
AGGAGGAGAGAGAACTAAGACTTAAAAGAAATGAAGAAATTCTCCAAGAAGTATCCAAGTCAATTAGGAAAGGCAACATA
AGGCTTATAGGTATCCCAGAGGGAGAAGAGAAGGATAAGGGAGCAGAAAGCTTGTTCAAAGAAATAATAGCTGGGAACTT
CCCAAACCTAGGAAAGGAGCTGGAAATACAAGTGAAAGAAGCTAAGAGAATTCCTAATTATATCACTGTAAAAAGACATT
CTCCAAGACATATAGTAGAAAAGCTGGCAAAAGTCAATGACAAAGAAAAAGTATTAAGGGCAGCAAACAAAAAACAACAA
ATAATAACCTATAAAGGAGCCCCTATCAGACTGTCAGCAGATTTCTCTACAGAAACCCTACAAGCTAGGAGAGAATGGAG
TGACATATTCAAAGCTTTAAAGGATAAAAATCTTCAGCCAAGAATACTCTATCCA
GAGATTAACACTATAAAGAAAAACCAATCAAAAACGTTGGAGATGAAAAACACAATGGATGAGGTAAAGAAAAATCTGGG
CTCCGTGAATAACAGAGCTGATATTATAGAGGAGACAATTAGTAGTCTGGAAGACAGAAATATAGAAATACTTCAGATAG
AGGAGGAGAGAGAACTAAGACTTAAAAGAAATGAAGAAATTCTCCAAGAAGTATCCAAGTCAATTAGGAAAGGCAACATA
AGGCTTATAGGTATCCCAGAGGGAGAAGAGAAGGATAAGGGAGCAGAAAGCTTGTTCAAAGAAATAATAGCTGGGAACTT
CCCAAACCTAGGAAAGGAGCTGGAAATACAAGTGAAAGAAGCTAAGAGAATTCCTAATTATATCACTGTAAAAAGACATT
CTCCAAGACATATAGTAGAAAAGCTGGCAAAAGTCAATGACAAAGAAAAAGTATTAAGGGCAGCAAACAAAAAACAACAA
ATAATAACCTATAAAGGAGCCCCTATCAGACTGTCAGCAGATTTCTCTACAGAAACCCTACAAGCTAGGAGAGAATGGAG
TGACATATTCAAAGCTTTAAAGGATAAAAATCTTCAGCCAAGAATACTCTATCCA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 0 .00 RPM |
| SRP021940_embryo | 0 .00 RPM |
| SRP021940_cerebellum | 0 .00 RPM |
| SRP021940_testis | 0 .00 RPM |
| SRP021940_placental_villous | 0 .00 RPM |
| SRP021940_articular_cartilage | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Equus caballus | ENSECAG00000010030 | within_species_paralog | 21 retrogenes |
retro_ecab_1021, retro_ecab_1023, retro_ecab_1035, retro_ecab_1071, retro_ecab_1089, retro_ecab_136, retro_ecab_182, retro_ecab_201, retro_ecab_281, retro_ecab_306, retro_ecab_486, retro_ecab_521, retro_ecab_537, retro_ecab_582, retro_ecab_590, retro_ecab_658, retro_ecab_670, retro_ecab_722, retro_ecab_786, retro_ecab_974, retro_ecab_996,
|
| Equus caballus | ENSECAG00000016527 | within_species_paralog | 5 retrogenes | |
| Equus caballus | ENSECAG00000022034 | within_species_paralog | 4 retrogenes | |
| Equus caballus | ENSECAG00000023806 | within_species_paralog | 15 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_54 | 71.22 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_117 | 50.72 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ecab_125 | 59.16 | 91.71 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ecab_346 | 57.43 | 97.07 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ecab_604 | 57.62 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ecab_774 | 58.74 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ecab_775 | 61.84 | 99.02 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ecab_878 | 54.97 | 82.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ecab_1018 | 64.68 | 96.10 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000020332 retrocopies