RetrogeneDB ID: | retro_ecab_1023 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 9:31540015..31540891(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010030 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.76 % |
Parental protein coverage: | 98.97 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 2 |
Parental | RQRSTFQVKEQDKTPEKELNETEISNLPDKVFKQKV-KLLTDLGRRMDEHSENFNKELENIKK-QSEMKN |
RQ...FQ..E.DK..E..LNETEI.NLPDK..K....K.LT.LGRR.DE.SENFNKELENIKK.QS..KN | |
Retrocopy | RQMNMFQIRE*DKFSEETLNETEINNLPDKEYKLTIIKMLTELGRRKDELSENFNKELENIKKNQS*LKN |
Parental | TIMEMKNSLEGLNSRVDDTEERISKLDERLEEVTQAEQIKEKM--KKTDSLRDLWDNIKCTKIRITGVPE |
TI.EM.N.LEGLN..VDDT.E.IS.LDERLEE.TQ.E..KEK...K..DS.R.LWDNIK...I.I.GV.E | |
Retrocopy | TILEMINLLEGLNNTVDDT*EQISELDERLEEITQGE*MKEKRIKKNKDSIRYLWDNIKHINIHIIGVQE |
Parental | -EEGDKGAEIYLIKIAENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGRNKERILKAARE |
.E..DK.A.....KIAENFP.L.KE.D.QVQEAQ..PN.INPKRHTPRHII.KI......K.RILK..RE | |
Retrocopy | >EKRDKEA*NLVEKIAENFPNLRKETDIQVQEAQRTPNKINPKRHTPRHIIIKIPRI-KDK*RILKVSRE |
Parental | RQQVTYKGNSIRLSADLSAET-LQARRKWHSIFKVLNRKKPPRILYLARSSFIMEG-EIKCFPDKQKLKE |
RQ.VTYKGN.IRLSAD.SAET.LQARR.W..IFKVL..KKP.....L.....I..G.EIK.FPDKQKLK. | |
Retrocopy | RQKVTYKGNPIRLSADFSAET<LQARREWQNIFKVLKGKKPTAKNILLGKVII*NGREIKSFPDKQKLKV |
Parental | FITKKPALQEMLKGL |
FITKKP.LQ.MLKGL | |
Retrocopy | FITKKPTLQQMLKGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .00 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .03 RPM | 0 .03 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .00 RPM |
SRP021940_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000010030 | 21 retrocopies |
retro_ecab_1021, retro_ecab_1023 , retro_ecab_1035, retro_ecab_1071, retro_ecab_1089, retro_ecab_136, retro_ecab_182, retro_ecab_201, retro_ecab_281, retro_ecab_306, retro_ecab_486, retro_ecab_521, retro_ecab_537, retro_ecab_582, retro_ecab_590, retro_ecab_658, retro_ecab_670, retro_ecab_722, retro_ecab_786, retro_ecab_974, retro_ecab_996,
|
Equus caballus | ENSECAG00000016527 | 5 retrocopies | |
Equus caballus | ENSECAG00000020332 | 9 retrocopies | |
Equus caballus | ENSECAG00000022034 | 4 retrocopies | |
Equus caballus | ENSECAG00000023806 | 15 retrocopies |