RetrogeneDB ID: | retro_ecab_858 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 5:46437211..46437926(-) | ||
Located in intron of: | ENSECAG00000016587 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000022034 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 50.62 % |
Parental protein coverage: | 99.58 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | KELENIKKNQSEMKNTILEMKNSLEGLNSRVDDTEEWISKLDERLEEVIQAAQIKEKGIKKNKDSVRDLW |
..LE...K...E.K..I.EMKNSLEG...R.....E...K...R....I.....KEK............. | |
Retrocopy | ENLERSQKEILELKSIITEMKNSLEGFKGRFEQAKESVNKFEDRAIKIIESEGQKEKN*RIMNRAQATMR |
Parental | NNIKHANIHIIRVPEGGERDKGTEKLFEEIIA-NFPNLRKGTDIQTQEAQRAPNKINPKRPTPRHIIIKM |
...K..NIHI...PEG..R.KGTE.L.EE..A.NFP.L.K.T.I...EAQ..PN..N.KR.T..HI.IK. | |
Retrocopy | HQQK*TNIHILGLPEGENREKGTERLSEELMAKNFPSLMKDTNINILEAQGIPNWMNSKRCTLSHINIKL |
Parental | SVIKDKERFLKATRER-KQNLTSRGSSIRFSADFPSETLEARRQWAGIFKVLKEKN-CQPRILRPAKLPF |
...K.KER.LK...ER.K...T..GSS.R..AD..SETLEARRQWA.IFKVL.E.N.CQPRI...AKL.F | |
Retrocopy | --LKAKERILKKQ*ER<KRLVTCKGSSVRL*ADLSSETLEARRQWADIFKVLEENN>CQPRIVYLAKLSF |
Parental | KSEGDIRTFPN--KLGEF-ITTRPTLRETLKGV |
KSEG.I.TFP...KL.EF..TTRP.L.E.LKG. | |
Retrocopy | KSEGEIKTFPDKQKLREF>LTTRPVLQEMLKGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .00 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .03 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .00 RPM |
SRP021940_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000010030 | 21 retrocopies |
retro_ecab_1021, retro_ecab_1023, retro_ecab_1035, retro_ecab_1071, retro_ecab_1089, retro_ecab_136, retro_ecab_182, retro_ecab_201, retro_ecab_281, retro_ecab_306, retro_ecab_486, retro_ecab_521, retro_ecab_537, retro_ecab_582, retro_ecab_590, retro_ecab_658, retro_ecab_670, retro_ecab_722, retro_ecab_786, retro_ecab_974, retro_ecab_996,
|
Equus caballus | ENSECAG00000016527 | 5 retrocopies | |
Equus caballus | ENSECAG00000020332 | 9 retrocopies | |
Equus caballus | ENSECAG00000022034 | 4 retrocopies | |
Equus caballus | ENSECAG00000023806 | 15 retrocopies |