RetrogeneDB ID: | retro_cfam_1312 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 29:28578870..28579897(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSCAFG00000002541 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 61.36 % |
Parental protein coverage: | 95.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 7 |
Parental | GLPSTPGQGVAASPSEPPGQASEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGPGGLTSAAPA-GG |
G..S.P..........P.......E.Q.....PP....L......P...G.G...GGP.GLT.AAPA... | |
Retrocopy | GVESRPQRALSSCTPGPSHDHPNPEQQGRDQQPPSPSLLPTPGLAPRAAGQGGVAGGPWGLTWAAPA>DR |
Parental | DKKVIATKVLGT-VKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVG-DGETVEFDVVEGEK |
D.KVI.T.V..T.V..FN.R.G.GF.NRNDTKED..VHQ.A.K.NNPRKYLRS...DGETVE.DVVEG.. | |
Retrocopy | DQKVITTNVFRTFVNCFNIRKGFGFPNRNDTKEDISVHQVAMK-NNPRKYLRSIE<DGETVECDVVEGKM |
Parental | GAEAANVTGPGGVPV-QGSKYAADRNHYRRYPRRR-GPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRR |
G...ANV.G.GGVPV.Q.SKY..DRNHYRR.P..R.GPP..Y.QNYQ..ESGEKN.GSES.P.GQAQQ.. | |
Retrocopy | GVDTANVPGLGGVPV<QSSKYTVDRNHYRRHPLGR<GPPLSYPQNYQDHESGEKNKGSESTP*GQAQQCP |
Parental | PY-RRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQ-GAGEQGRPVRQNMYRGYRPRFRRGPPRQRQ |
...R.R..P...M.RPYGR.PQ.SNPPVQGE.M.GADNQ.GA.EQGRPVRQ.M.RGYRPR...GPP.QRQ | |
Retrocopy | LHCRLRTVPTLLMWRPYGRQPQFSNPPVQGEGMAGADNQ<GAQEQGRPVRQSMNRGYRPRSHTGPPHQRQ |
Parental | PREDGNEEDKENQGDE-TQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPE-AEQGG |
.REDGN..DKENQ.D...Q.QQPPQR.Y.RNFNY..R.PENPKPQDGKETKA.DPPA..SS..E.AEQG. | |
Retrocopy | SREDGNKDDKENQADD<PQDQQPPQRQYHRNFNYLHRCPENPKPQDGKETKAVDPPANTSSHSE<AEQGR |
Parental | AE |
AE | |
Retrocopy | AE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 132 .42 RPM |
SRP017611_brain | 0 .00 RPM | 22 .31 RPM |
SRP017611_kidney | 0 .00 RPM | 138 .55 RPM |
SRP017611_liver | 0 .00 RPM | 61 .13 RPM |