RetrogeneDB ID: | retro_tsyr_610 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_148943:4720..5237(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSTSYG00000006915 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 65.57 % |
Parental protein coverage: | 55.25 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 4 |
Parental | AIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPR-NY |
AIKKNNPRK.L.SVGDGE.V.FD.V.GE.GA.AANVTGPGGVPVQG.K.AAD.N..RRYP..RGPP..NY | |
Retrocopy | AIKKNNPRKHLGSVGDGEAVAFDAV-GERGATAANVTGPGGVPVQGNK*AADQNQGRRYPCGRGPPA<NY |
Parental | QQNYQNSESGEKNEGSESAPEGQAQ-QRRPYRRRRFPPYYMR-RPYGRRPQYSNPPVQGEVMEGADNQGA |
QQNYQ..ES.EKNEGS....EG.A.....P....R..P...R.RPYG.RP.Y.NP.VQ.EVMEGAD...A | |
Retrocopy | QQNYQGCESREKNEGS----EGTAE>AQQP*VKHRASPASLR<RPYGHRPRYPNPAVQ-EVMEGADK*NA |
Parental | GEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDG-NEEDKENQG |
GEQGRP..QN.Y.GYRP.F.R.P..QR.PR..G..EEDKEN.G | |
Retrocopy | GEQGRPMKQNLYPGYRP*FCRDPACQR*PRKPG<HEEDKEN*G |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |