RetrogeneDB ID: | retro_fcat_1956 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:118916578..118917264(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSFCAG00000022604 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 57.38 % |
Parental protein coverage: | 93.55 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | KNNPRKYL-RSVGDGETVEFDVVEG-EKGAEAANVTGPGGV-PVQGSKY-AADRNHYRRYPRRRGPPRNY |
KN.PRKYL..SVGDGETVE.D..EG.E.GAEAANVTG.GG..PVQGS.Y.AA.R.HY...PR.RGPPR.. | |
Retrocopy | KNYPRKYL<HSVGDGETVELDA-EG>EGGAEAANVTGQGGAGPVQGSEY>AAGRKHYGHSPRGRGPPRDS |
Parental | QQNYQNSESGEKNEGSESAPEGQA-QQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAG |
..N...SE.GEKNE.SESAPEGQA..QRRP.R.R.F.PYY..RP.GR.PQ.S.PPV..EVM.....QGA. | |
Retrocopy | RHNDRKSERGEKNEASESAPEGQA>SQRRPHRSRWFAPYYVWRPCGRGPQSSDPPVREEVMQDVHHQGAR |
Parental | EQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRPENPKP |
E.GRPVRQ.M.RG..P.....P......R.............E...Q.P....YR.NF...R.RPEN.K. | |
Retrocopy | ERGRPVRQDMFRGC*PTGSSLPKSA*RGRQ*RR*DQGDESEGEQSPQHP----YRHNFDHPRGRPENAKA |
Parental | QDGKETKAADPPAENSSAPEAEQGGAE |
Q..K.TKAA.PPAE..S..EAEQ.GAE | |
Retrocopy | QGAKDTKAAGPPAEDLSSSEAEQAGAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 49 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 265 .48 RPM |
SRP017611_liver | 0 .00 RPM | 333 .60 RPM |