RetrogeneDB ID: | retro_fcat_145 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:13835073..13835462(+) | ||
Located in intron of: | ENSFCAG00000031022 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSFCAG00000022604 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 64.89 % |
Parental protein coverage: | 51.61 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | YMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKEN |
YM.R..G...QYSN.PV.GEVMEGADN.G.GEQGRPVRQNM..GY...F.R..P.QRQP.E.G.E.DKEN | |
Retrocopy | YMWRCHGC*TQYSNFPVWGEVMEGADNEGSGEQGRPVRQNMHWGYK*PFHRNLPCQRQPKENGSEGDKEN |
Parental | QGDETQGQQPPQRRYRRNFNYRR--RRPENPKPQDGKET-KAADPPAENSSAPEAEQGGAE |
QG.ETQGQ.PP...Y..N.NY....R.PENPKPQDGKET.KAA.PP.EN.S...A.QG..E | |
Retrocopy | QGGETQGQ*PPPHLYYCNLNYHNTDRSPENPKPQDGKET<KAANPPVEN*SSTKAVQGRVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 49 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 265 .48 RPM |
SRP017611_liver | 0 .00 RPM | 333 .60 RPM |