RetrogeneDB ID: | retro_cfam_758 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 17:32721505..32722074(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSCAFG00000002541 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 55.28 % |
Parental protein coverage: | 53.48 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | RTTSRDRRGRGGLPSTPGQGV--AASPSEPPGQASEAETQQPPAAPPAAPALSAADTKPGTT-GSGAGSG |
RT.S......G....TPG.G....A.PS.PP......E.Q....A.PAAP.LS.ADTK.....GS.AGS. | |
Retrocopy | RTQSSSTTTTGSYHHTPGGGAPTVAGPSHPP---HKPEQQGLEPAAPAAPDLSTADTKLSMV<GSSAGSN |
Parental | G-PGGLTSAAPAGGDKKVIATKV-LGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGD |
..PGGLTS..PA...K..I...V.L.TVKWF.V.NG.GFINR.DTK..VFVH.TAI.KNNPRKYL.SVGD | |
Retrocopy | S<PGGLTSLVPAHCNKRIITRMV<LRTVKWFSVSNGHGFINRTDTK*VVFVHKTAI-KNNPRKYLGSVGD |
Parental | GE-TVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRR-YPRRRGPPRNYQQNY |
.E..VEFDVVEGE...EAA.VT.PGG.PVQGS........Y.R..P..R.PP....QNY | |
Retrocopy | RE<EVEFDVVEGEEDVEAAYVTNPGGAPVQGSI*MQLTCNYYRHFPYDRDPPPDSKQNY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 132 .42 RPM |
SRP017611_brain | 0 .00 RPM | 22 .31 RPM |
SRP017611_kidney | 0 .00 RPM | 138 .55 RPM |
SRP017611_liver | 0 .00 RPM | 61 .13 RPM |