RetrogeneDB ID: | retro_vpac_647 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_946:90037..90526(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSVPAG00000000068 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 98.77 % |
Parental protein coverage: | 60.82 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT |
TKVLGTVKWFNVRN.YGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT | |
Retrocopy | TKVLGTVKWFNVRNRYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT |
Parental | GPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPY |
GPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSE.GEKNEGSESAPEGQAQQRRPYRRRRFPPY | |
Retrocopy | GPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSENGEKNEGSESAPEGQAQQRRPYRRRRFPPY |
Parental | YMRRPYGRRPQYSNPPVQGEVME |
YMRRPYGRRPQYSNPPVQGEVME | |
Retrocopy | YMRRPYGRRPQYSNPPVQGEVME |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |