RetrogeneDB ID: | retro_fcat_241 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:95833674..95834147(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSFCAG00000022604 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 55.28 % |
Parental protein coverage: | 62.9 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | ESGEKN-EGSESAPEGQAQQ-RRPYRRRRFPP-YYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRP |
E.GEK...GS..AP....QQ.R.....RR.P.........G..PQ...P.V.GE..EGAD..GAGEQGRP | |
Retrocopy | E*GEKRGDGSWRAPQVRGQQSRHSHTARRLPA<FLLSTDCGCGPQDPSPSVGGEKVEGADKWGAGEQGRP |
Parental | VRQNMY-RGYRPRFRRGP-PRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRPENPKPQDG |
.RQN...RGYRPR..RGP.P.QR.PREDG.EE.K.NQGD.TQGQQ.PQ..Y..NFN...R..EN.K..D. | |
Retrocopy | *RQNVI<RGYRPRLPRGP>PYQRWPREDGDEEGKGNQGDGTQGQQVPQG*YPQNFNFPHRGSENWKLLDS |
Parental | KETKAADPPAENSSAPEAEQG |
.ETKAADPPAE......A.QG | |
Retrocopy | TETKAADPPAETFAPA*AVQG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 49 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 265 .48 RPM |
SRP017611_liver | 0 .00 RPM | 333 .60 RPM |