RetrogeneDB ID: | retro_cpor_905 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_32:23806584..23807306(-) | ||
Located in intron of: | ENSCPOG00000013316 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YB1 | ||
Ensembl ID: | ENSCPOG00000010888 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:RefSeq peptide;Acc:NP_001166512] |
Percent Identity: | 88.43 % |
Parental protein coverage: | 74.38 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGE |
GPGGLT.AAP.GGDKK.I.TKVL.TVKWFNVRNGY.FI.RNDTKEDVFVHQT.IKKNNPRKYL.SVGDGE | |
Retrocopy | GPGGLTLAAPTGGDKKLITTKVL*TVKWFNVRNGYDFIDRNDTKEDVFVHQTSIKKNNPRKYLHSVGDGE |
Parental | TVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNEGSESA |
TVEF.VVEGEKGA.AANVTGPG.VPVQGSKYAAD.NHYRRYPRRRGPP.NY.QNYQNSESGEKNEGSES. | |
Retrocopy | TVEFEVVEGEKGAKAANVTGPGEVPVQGSKYAADCNHYRRYPRRRGPPCNY*QNYQNSESGEKNEGSEST |
Parental | P-EGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRQVRQNMYRGYRPRFR |
P.EGQAQQR.PY.RRRFPPYYMRRPYG..PQY.NPPVQGEVMEGAD.QGAGEQGRQ.RQNMYRGYR...R | |
Retrocopy | P<EGQAQQRQPYCRRRFPPYYMRRPYGCGPQYFNPPVQGEVMEGADKQGAGEQGRQMRQNMYRGYRSGLR |
Parental | RGPPRQRQPREDGNEEDKENQGDETQGQQPPQ |
RGPP.QRQPREDGNEEDKENQGDETQGQQPPQ | |
Retrocopy | RGPPHQRQPREDGNEEDKENQGDETQGQQPPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .52 RPM | 81 .67 RPM |
SRP017611_kidney | 0 .10 RPM | 293 .44 RPM |
SRP017611_liver | 0 .17 RPM | 148 .64 RPM |
SRP040447_lung | 0 .33 RPM | 353 .45 RPM |
SRP040447_skeletal_muscle | 0 .12 RPM | 809 .64 RPM |