RetrogeneDB ID: | retro_tsyr_2037 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_81881:4809..5310(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSTSYG00000006915 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 83.23 % |
Parental protein coverage: | 51.54 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | YQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAG |
Y.QN.QNSESGEKNEG.ESAPEGQAQQ.RPY.R..FPPYYMRR.Y...PQYSNPPVQGEVM.GADNQGA. | |
Retrocopy | YKQNCQNSESGEKNEGLESAPEGQAQQHRPYCRQLFPPYYMRRLYEC*PQYSNPPVQGEVMKGADNQGAR |
Parental | EQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRPENPKP |
EQGRPVRQNMY.GYRP.FRR.PP.QRQPREDG.EEDKENQGD.TQGQQPPQ.RY..NFNY..R.PENPKP | |
Retrocopy | EQGRPVRQNMYQGYRP*FRRDPPHQRQPREDGSEEDKENQGDDTQGQQPPQLRYCHNFNY*CRLPENPKP |
Parental | QDGKETKAADPPAENSSAPEAEQGGAE |
QDGKE.KAA.PPAENSSAP.AEQGGAE | |
Retrocopy | QDGKEMKAANPPAENSSAPKAEQGGAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |