RetrogeneDB ID: | retro_cfam_294 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 1:21025936..21026281(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL35 | ||
Ensembl ID: | ENSCAFG00000020212 | ||
Aliases: | None | ||
Description: | ribosomal protein L35 [Source:HGNC Symbol;Acc:10344] |
Percent Identity: | 59.84 % |
Parental protein coverage: | 96.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | IKARDLRGKKKEELLKQLEDLK-VELSQLRVAKVTGGAAS-KLSKIRVVRKSIARV-LTVINQTQKENLR |
.KARD.R.K.K...LK.LEDL..V..SQL..AK.TG..AS.KLS..R.V.K.I....LT..NQTQKENLR | |
Retrocopy | VKARDPRTKGKP--LKLLEDLR<VVMSQLWGAKLTGCVAS<KLSRMRAVSKPISVI<LTFTNQTQKENLR |
Parental | KFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK |
KFY.G.KYKP..L.P.KT..M..RLNK.E..LKTKKQ..KE.LYPL....VK | |
Retrocopy | KFYSGRKYKPPGLQPQKTQVMCCRLNKGEK-LKTKKQPWKEQLYPLGESVVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 226 .00 RPM |
SRP017611_brain | 0 .00 RPM | 56 .13 RPM |
SRP017611_kidney | 0 .00 RPM | 296 .04 RPM |
SRP017611_liver | 0 .00 RPM | 83 .39 RPM |