RetrogeneDB ID: | retro_rnor_1768 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 20:48843584..48843933(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl35 | ||
Ensembl ID: | ENSRNOG00000014272 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L35 [Source:UniProtKB/Swiss-Prot;Acc:P17078] |
Percent Identity: | 86.32 % |
Parental protein coverage: | 94.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKK |
DLRGK..EELL.QLD.L.V.L.QLRVAKVTGGAASKLSK.RVVRKSIARVLTVINQTQ..NLRKFYKGKK | |
Retrocopy | DLRGKEEEELLTQLDSLRVGLFQLRVAKVTGGAASKLSKVRVVRKSIARVLTVINQTQTGNLRKFYKGKK |
Parental | YKPLDLRPKKTRAMRRRL-TKHEEKLKTKKQQRKERLYPLRKYAVKA |
YKPLDLRPKKTRA.RRRL.TKHEEK..TKKQQRKERLYPLRK.A.KA | |
Retrocopy | YKPLDLRPKKTRATRRRL>TKHEEKPETKKQQRKERLYPLRKCAAKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 79 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 111 .30 RPM |
SRP017611_liver | 0 .00 RPM | 59 .37 RPM |