RetrogeneDB - Parental gene ENSRNOG00000014272 details

                            
>ENSRNOG00000014272
ATGGCCAAGATTAAGGCTCGGGACCTGCGCGGCAAGAAGAAGGAGGAGCTGTTGAAACAACTGGATGATCTGAAGGTGGA

ACTGTCCCAGCTTCGCGTGGCCAAAGTGACAGGCGGCGCCGCGTCCAAGCTCTCCAAGATACGAGTCGTACGCAAATCCA

TCGCCCGTGTCCTCACTGTCATTAATCAGACTCAAAAGGAAAACCTCAGGAAATTCTACAAGGGAAAGAAGTACAAGCCC

CTGGACCTGCGACCCAAGAAGACAAGAGCCATGCGCCGCCGGCTCACCAAGCATGAAGAGAAGCTGAAGACCAAGAAGCA

GCAGCGGAAGGAGCGGCTGTACCCACTGCGCAAGTACGCAGTCAAGGCCTGA

Library	Parental gene expression (RPM)
SRP017611_brain	79 .59 RPM
SRP017611_kidney	111 .30 RPM
SRP017611_liver	59 .37 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000016537	possible_ortholog	12 retrogenes	retro_amel_1010, retro_amel_1180, retro_amel_1341, retro_amel_1686, retro_amel_1746, retro_amel_1844, retro_amel_1887, retro_amel_351, retro_amel_584, retro_amel_819, retro_amel_893, retro_amel_94,
Bos taurus	ENSBTAG00000003205	possible_ortholog	3 retrogenes	retro_btau_1060, retro_btau_1340, retro_btau_185,
Canis familiaris	ENSCAFG00000020212	possible_ortholog	7 retrogenes	retro_cfam_1566, retro_cfam_1635, retro_cfam_2180, retro_cfam_294, retro_cfam_529, retro_cfam_738, retro_cfam_995,
Callithrix jacchus	ENSCJAG00000006724	possible_ortholog	5 retrogenes	retro_cjac_1074, retro_cjac_1308, retro_cjac_1377, retro_cjac_2458, retro_cjac_387,
Cavia porcellus	ENSCPOG00000022811	ortholog_one2many	1 retrogene	retro_cpor_414,
Equus caballus	ENSECAG00000009389	possible_ortholog	3 retrogenes	retro_ecab_1083, retro_ecab_115, retro_ecab_813,
Erinaceus europaeus	ENSEEUG00000012696	ortholog_one2many	8 retrogenes	retro_eeur_144, retro_eeur_217, retro_eeur_225, retro_eeur_251, retro_eeur_319, retro_eeur_487, retro_eeur_533, retro_eeur_56,
Echinops telfairi	ENSETEG00000000876	possible_ortholog	10 retrogenes	retro_etel_1013, retro_etel_1267, retro_etel_1383, retro_etel_1556, retro_etel_1848, retro_etel_1931, retro_etel_303, retro_etel_637, retro_etel_747, retro_etel_942,
Felis catus	ENSFCAG00000030388	possible_ortholog	5 retrogenes	retro_fcat_1129, retro_fcat_1790, retro_fcat_1954, retro_fcat_397, retro_fcat_782,
Homo sapiens	ENSG00000136942	possible_ortholog	6 retrogenes	retro_hsap_1233, retro_hsap_326, retro_hsap_3579, retro_hsap_3832, retro_hsap_3867, retro_hsap_4026,
Gorilla gorilla	ENSGGOG00000004111	possible_ortholog	3 retrogenes	retro_ggor_2581, retro_ggor_351, retro_ggor_966,
Loxodonta africana	ENSLAFG00000010031	possible_ortholog	3 retrogenes	retro_lafr_128, retro_lafr_300, retro_lafr_642,
Microcebus murinus	ENSMICG00000002922	possible_ortholog	2 retrogenes	retro_mmur_1502, retro_mmur_215,
Myotis lucifugus	ENSMLUG00000029323	possible_ortholog	3 retrogenes	retro_mluc_1495, retro_mluc_2392, retro_mluc_969,
Macaca mulatta	ENSMMUG00000005260	possible_ortholog	5 retrogenes	retro_mmul_1304, retro_mmul_156, retro_mmul_1623, retro_mmul_1912, retro_mmul_265,
Monodelphis domestica	ENSMODG00000019753	ortholog_one2many	1 retrogene	retro_mdom_1039,
Mustela putorius furo	ENSMPUG00000013950	possible_ortholog	5 retrogenes	retro_mputfur_1136, retro_mputfur_1348, retro_mputfur_1478, retro_mputfur_1484, retro_mputfur_425,
Mus musculus	ENSMUSG00000062997	ortholog_many2many	1 retrogene	retro_mmus_236,
Nomascus leucogenys	ENSNLEG00000017303	possible_ortholog	7 retrogenes	retro_nleu_1153, retro_nleu_1770, retro_nleu_1850, retro_nleu_1921, retro_nleu_2104, retro_nleu_2836, retro_nleu_953,
Ornithorhynchus anatinus	ENSOANG00000011612	ortholog_one2many	1 retrogene	retro_oana_56,
Oryctolagus cuniculus	ENSOCUG00000002996	possible_ortholog	4 retrogenes	retro_ocun_200, retro_ocun_238, retro_ocun_451, retro_ocun_791,
Otolemur garnettii	ENSOGAG00000008513	possible_ortholog	7 retrogenes	retro_ogar_1265, retro_ogar_1271, retro_ogar_1828, retro_ogar_2005, retro_ogar_2253, retro_ogar_2610, retro_ogar_2903,
Ochotona princeps	ENSOPRG00000000406	possible_ortholog	9 retrogenes	retro_opri_1077, retro_opri_1134, retro_opri_244, retro_opri_273, retro_opri_339, retro_opri_473, retro_opri_565, retro_opri_628, retro_opri_650,
Pongo abelii	ENSPPYG00000019603	possible_ortholog	7 retrogenes	retro_pabe_1026, retro_pabe_165, retro_pabe_1718, retro_pabe_2948, retro_pabe_3064, retro_pabe_3303, retro_pabe_3304,
Pan troglodytes	ENSPTRG00000021361	possible_ortholog	6 retrogenes	retro_ptro_2426, retro_ptro_2609, retro_ptro_262, retro_ptro_2635, retro_ptro_2730, retro_ptro_846,
Sarcophilus harrisii	ENSSHAG00000004756	ortholog_one2many	1 retrogene	retro_shar_775,
Sus scrofa	ENSSSCG00000005595	ortholog_one2many	5 retrogenes	retro_sscr_1168, retro_sscr_214, retro_sscr_553, retro_sscr_679, retro_sscr_905,
Ictidomys tridecemlineatus	ENSSTOG00000007901	possible_ortholog	1 retrogene	retro_itri_1735,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_rnor_126	91.06	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_rnor_147	95.12	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_rnor_205	82.79	99.19	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_rnor_233	94.55	89.43	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_rnor_451	85.37	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_rnor_1254	90.32	99.19	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_rnor_1473	88.71	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_rnor_1509	70.34	95.12	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_rnor_1768	86.32	94.31	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_rnor_1957	63.89	87.80	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_rnor_2183	87.64	72.36	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_rnor_2618	77.24	100.00	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_rnor_2681	74.40	100.00	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_rnor_2719	81.37	82.11	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSRNOG00000014272 retrocopies

Parental gene:	Rpl35, ENSRNOG00000014272
Aliases:	None
Description:	60S ribosomal protein L35 [Source:UniProtKB/Swiss-Prot;Acc:P17078]
Organism:	*Rat (Rattus norvegicus)*
Coordinates:	3:28516639..28519600(-)

Parental gene:

Rpl35, ENSRNOG00000014272