Parental gene: | Rpl35, ENSRNOG00000014272 |
| Aliases: | None |
| Description: | 60S ribosomal protein L35 [Source:UniProtKB/Swiss-Prot;Acc:P17078] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 3:28516639..28519600(-) |
>ENSRNOG00000014272
ATGGCCAAGATTAAGGCTCGGGACCTGCGCGGCAAGAAGAAGGAGGAGCTGTTGAAACAACTGGATGATCTGAAGGTGGA
ACTGTCCCAGCTTCGCGTGGCCAAAGTGACAGGCGGCGCCGCGTCCAAGCTCTCCAAGATACGAGTCGTACGCAAATCCA
TCGCCCGTGTCCTCACTGTCATTAATCAGACTCAAAAGGAAAACCTCAGGAAATTCTACAAGGGAAAGAAGTACAAGCCC
CTGGACCTGCGACCCAAGAAGACAAGAGCCATGCGCCGCCGGCTCACCAAGCATGAAGAGAAGCTGAAGACCAAGAAGCA
GCAGCGGAAGGAGCGGCTGTACCCACTGCGCAAGTACGCAGTCAAGGCCTGA
ATGGCCAAGATTAAGGCTCGGGACCTGCGCGGCAAGAAGAAGGAGGAGCTGTTGAAACAACTGGATGATCTGAAGGTGGA
ACTGTCCCAGCTTCGCGTGGCCAAAGTGACAGGCGGCGCCGCGTCCAAGCTCTCCAAGATACGAGTCGTACGCAAATCCA
TCGCCCGTGTCCTCACTGTCATTAATCAGACTCAAAAGGAAAACCTCAGGAAATTCTACAAGGGAAAGAAGTACAAGCCC
CTGGACCTGCGACCCAAGAAGACAAGAGCCATGCGCCGCCGGCTCACCAAGCATGAAGAGAAGCTGAAGACCAAGAAGCA
GCAGCGGAAGGAGCGGCTGTACCCACTGCGCAAGTACGCAGTCAAGGCCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 59 .37 RPM |
| SRP017611_kidney | 111 .30 RPM |
| SRP017611_brain | 79 .59 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000016537 | possible_ortholog | 12 retrogenes | |
| Bos taurus | ENSBTAG00000003205 | possible_ortholog | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000020212 | possible_ortholog | 7 retrogenes | |
| Callithrix jacchus | ENSCJAG00000006724 | possible_ortholog | 5 retrogenes | |
| Cavia porcellus | ENSCPOG00000022811 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000009389 | possible_ortholog | 3 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000012696 | ortholog_one2many | 8 retrogenes | |
| Echinops telfairi | ENSETEG00000000876 | possible_ortholog | 10 retrogenes | |
| Felis catus | ENSFCAG00000030388 | possible_ortholog | 5 retrogenes | |
| Homo sapiens | ENSG00000136942 | possible_ortholog | 6 retrogenes | |
| Gorilla gorilla | ENSGGOG00000004111 | possible_ortholog | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000010031 | possible_ortholog | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000002922 | possible_ortholog | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000029323 | possible_ortholog | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000005260 | possible_ortholog | 5 retrogenes | |
| Monodelphis domestica | ENSMODG00000019753 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000013950 | possible_ortholog | 5 retrogenes | |
| Mus musculus | ENSMUSG00000062997 | ortholog_many2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017303 | possible_ortholog | 7 retrogenes | |
| Ornithorhynchus anatinus | ENSOANG00000011612 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000002996 | possible_ortholog | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000008513 | possible_ortholog | 7 retrogenes | |
| Ochotona princeps | ENSOPRG00000000406 | possible_ortholog | 9 retrogenes | |
| Pongo abelii | ENSPPYG00000019603 | possible_ortholog | 7 retrogenes | |
| Pan troglodytes | ENSPTRG00000021361 | possible_ortholog | 6 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000004756 | ortholog_one2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000005595 | ortholog_one2many | 5 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000007901 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_126 | 91.06 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_147 | 95.12 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_205 | 82.79 | 99.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_rnor_233 | 94.55 | 89.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_rnor_451 | 85.37 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_rnor_1254 | 90.32 | 99.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_rnor_1473 | 88.71 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_rnor_1509 | 70.34 | 95.12 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_rnor_1768 | 86.32 | 94.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_rnor_1957 | 63.89 | 87.80 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_rnor_2183 | 87.64 | 72.36 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_rnor_2618 | 77.24 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_rnor_2681 | 74.40 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_rnor_2719 | 81.37 | 82.11 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000014272 retrocopies