RetrogeneDB ID: | retro_rnor_1254 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 17:11298263..11298629(+) | ||
Located in intron of: | ENSRNOG00000000133 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000050692 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl35 | ||
Ensembl ID: | ENSRNOG00000014272 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L35 [Source:UniProtKB/Swiss-Prot;Acc:P17078] |
Percent Identity: | 90.32 % |
Parental protein coverage: | 99.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | AKIKARDLRGKKKEEL-LKQLDDLKV-ELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENL |
A..KARDLRGKK.EEL..KQLDDLKV.ELSQLRVAKVTG.AASKLSK.RVVRKSIARVLTVIN.TQKENL | |
Retrocopy | AMAKARDLRGKKEEEL<VKQLDDLKV>ELSQLRVAKVTGSAASKLSKRRVVRKSIARVLTVINETQKENL |
Parental | RKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVKA |
RKFYKGKKYKPLDLRP.KTRAMRRRLTKHEEKLKTKKQQ.KERLYPLRK.AVKA | |
Retrocopy | RKFYKGKKYKPLDLRPEKTRAMRRRLTKHEEKLKTKKQQQKERLYPLRKCAVKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 79 .59 RPM |
SRP017611_kidney | 0 .07 RPM | 111 .30 RPM |
SRP017611_liver | 0 .00 RPM | 59 .37 RPM |