RetrogeneDB ID: | retro_ocun_238 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 9:89494493..89494865(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000026631 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000002996 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.56 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLR |
MAKIKARDLRGKKKEELLKQLDDLKVELSQL.VAKVTGGAASKLSKIRVV.KSIARVLTVINQTQKENLR | |
Retrocopy | MAKIKARDLRGKKKEELLKQLDDLKVELSQLHVAKVTGGAASKLSKIRVVCKSIARVLTVINQTQKENLR |
Parental | KFYKGKKYKPLDLRPKKTRAMRRRLNKHEESLKTKKQQRKERLYPLRKYAVKA |
KFYKGKKYKPLDLRPKKT.AMRRRLNKHEESLKTKKQQRKERLYPLRKYAVKA | |
Retrocopy | KFYKGKKYKPLDLRPKKTCAMRRRLNKHEESLKTKKQQRKERLYPLRKYAVKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .39 RPM | 73 .51 RPM |
SRP017611_kidney | 0 .41 RPM | 146 .05 RPM |
SRP017611_liver | 0 .15 RPM | 34 .30 RPM |