RetrogeneDB ID: | retro_rnor_2681 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 9:49079375..49079744(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000024856 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl35 | ||
Ensembl ID: | ENSRNOG00000014272 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L35 [Source:UniProtKB/Swiss-Prot;Acc:P17078] |
Percent Identity: | 74.4 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGG-AASKLSKIRVVRKSIARVLTVINQTQKENL |
MAKI.A.DLR.KKKEELL.QLD..KVELSQL.V.....G.A....S...V.RKSIA.VLTVINQTQKENL | |
Retrocopy | MAKINAWDLRSKKKEELLEQLDNPKVELSQLHVVAKVTG>APHPSSPR*VIRKSIAHVLTVINQTQKENL |
Parental | R-KFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVKA |
R.KFYK..KYKPLDL.PKKTRAM.R.LTK.EE.LKTK.QQRKERLYPLRKY.VKA | |
Retrocopy | R<KFYKREKYKPLDLLPKKTRAMGRWLTKQEERLKTKTQQRKERLYPLRKYPVKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 79 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 111 .30 RPM |
SRP017611_liver | 0 .00 RPM | 59 .37 RPM |