Parental gene:

RPL35, ENSSSCG00000005595

Aliases:None
Description:Sus scrofa ribosomal protein L35 (RPL35), mRNA. [Source:RefSeq mRNA;Acc:NM_214326]
Organism:Pig (Sus scrofa)
Coordinates:1:299461609..299467317(-)


>ENSSSCG00000005595
ATGGCCAAGATTAAGGCTCGAGACCTTCGGGGCAAGAAGAAGGAGGAGCTGCTGAAACAACTGGAGGACCTGAAGGTGGA
GCTGTCCCAACTGCGCGTCGCGAAAGTGACAGGCGGGGCGGCTTCCAAACTCTCCAAGATCCGAGTTGTTCGCAAATCCA
TTGCCCGCGTTCTCACCGTCATCAACCAGACCCAGAAAGAGAACCTCAGGAAATTCTATAAGGGCAAGAAGTACAAGCCT
CTGGATCTACGGCCCAAGAAAACACGTGCCATGCGCCGCCGGCTCAACAAGCACGAGGAGAACCTGAAGACCAAGAAGCA
GCAGCGGAAGGAGCGGTTGTACCCACTCCGGAAGTTCGCCGTCAAGGCCTGA

Library Parental gene expression (RPM)
SRP014902_placenta 228 .70 RPM
SRP014902_testis 744 .01 RPM
SRP018288_heart 201 .93 RPM
SRP018288_kidney 260 .15 RPM
SRP018288_liver 220 .84 RPM
SRP018288_lung 253 .04 RPM
SRP018856_adipose 1406 .72 RPM
SRP035408_brain 723 .34 RPM
SRP035408_liver 544 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016537 ortholog_one2many 12 retrogenes
retro_amel_1010, retro_amel_1180, retro_amel_1341, retro_amel_1686, retro_amel_1746, retro_amel_1844, retro_amel_1887, retro_amel_351, retro_amel_584, retro_amel_819, retro_amel_893, retro_amel_94,
Bos taurus ENSBTAG00000003205 ortholog_one2many 3 retrogenes
retro_btau_1060, retro_btau_1340, retro_btau_185,
Canis familiaris ENSCAFG00000020212 ortholog_one2one 7 retrogenes
retro_cfam_1566, retro_cfam_1635, retro_cfam_2180, retro_cfam_294, retro_cfam_529, retro_cfam_738, retro_cfam_995,
Callithrix jacchus ENSCJAG00000006724 ortholog_one2one 5 retrogenes
retro_cjac_1074, retro_cjac_1308, retro_cjac_1377, retro_cjac_2458, retro_cjac_387,
Cavia porcellus ENSCPOG00000022811 ortholog_one2one 1 retrogene
retro_cpor_414,
Equus caballus ENSECAG00000009389 ortholog_one2many 3 retrogenes
retro_ecab_1083, retro_ecab_115, retro_ecab_813,
Erinaceus europaeus ENSEEUG00000012696 ortholog_one2one 8 retrogenes
retro_eeur_144, retro_eeur_217, retro_eeur_225, retro_eeur_251, retro_eeur_319, retro_eeur_487, retro_eeur_533, retro_eeur_56,
Echinops telfairi ENSETEG00000000876 ortholog_one2one 10 retrogenes
retro_etel_1013, retro_etel_1267, retro_etel_1383, retro_etel_1556, retro_etel_1848, retro_etel_1931, retro_etel_303, retro_etel_637, retro_etel_747, retro_etel_942,
Felis catus ENSFCAG00000030388 ortholog_one2many 5 retrogenes
retro_fcat_1129, retro_fcat_1790, retro_fcat_1954, retro_fcat_397, retro_fcat_782,
Homo sapiens ENSG00000136942 ortholog_one2one 6 retrogenes
retro_hsap_1233, retro_hsap_326, retro_hsap_3579, retro_hsap_3832, retro_hsap_3867, retro_hsap_4026,
Gorilla gorilla ENSGGOG00000004111 ortholog_one2many 3 retrogenes
retro_ggor_2581, retro_ggor_351, retro_ggor_966,
Loxodonta africana ENSLAFG00000010031 ortholog_one2many 3 retrogenes
retro_lafr_128, retro_lafr_300, retro_lafr_642,
Microcebus murinus ENSMICG00000002922 ortholog_one2one 2 retrogenes
retro_mmur_1502, retro_mmur_215,
Myotis lucifugus ENSMLUG00000029323 ortholog_one2one 3 retrogenes
retro_mluc_1495, retro_mluc_2392, retro_mluc_969,
Macaca mulatta ENSMMUG00000005260 ortholog_one2many 5 retrogenes
retro_mmul_1304, retro_mmul_156, retro_mmul_1623, retro_mmul_1912, retro_mmul_265,
Monodelphis domestica ENSMODG00000019753 ortholog_one2one 1 retrogene
retro_mdom_1039,
Mustela putorius furo ENSMPUG00000013950 ortholog_one2many 5 retrogenes
retro_mputfur_1136, retro_mputfur_1348, retro_mputfur_1478, retro_mputfur_1484, retro_mputfur_425,
Mus musculus ENSMUSG00000062997 ortholog_one2many 1 retrogene
retro_mmus_236,
Nomascus leucogenys ENSNLEG00000017303 ortholog_one2one 7 retrogenes
retro_nleu_1153, retro_nleu_1770, retro_nleu_1850, retro_nleu_1921, retro_nleu_2104, retro_nleu_2836, retro_nleu_953,
Ornithorhynchus anatinus ENSOANG00000011612 ortholog_one2one 1 retrogene
retro_oana_56,
Oryctolagus cuniculus ENSOCUG00000002996 ortholog_one2many 4 retrogenes
retro_ocun_200, retro_ocun_238, retro_ocun_451, retro_ocun_791,
Otolemur garnettii ENSOGAG00000008513 ortholog_one2one 7 retrogenes
retro_ogar_1265, retro_ogar_1271, retro_ogar_1828, retro_ogar_2005, retro_ogar_2253, retro_ogar_2610, retro_ogar_2903,
Ochotona princeps ENSOPRG00000000406 ortholog_one2one 9 retrogenes
retro_opri_1077, retro_opri_1134, retro_opri_244, retro_opri_273, retro_opri_339, retro_opri_473, retro_opri_565, retro_opri_628, retro_opri_650,
Pongo abelii ENSPPYG00000019603 ortholog_one2many 7 retrogenes
retro_pabe_1026, retro_pabe_165, retro_pabe_1718, retro_pabe_2948, retro_pabe_3064, retro_pabe_3303, retro_pabe_3304,
Pan troglodytes ENSPTRG00000021361 ortholog_one2one 6 retrogenes
retro_ptro_2426, retro_ptro_2609, retro_ptro_262, retro_ptro_2635, retro_ptro_2730, retro_ptro_846,
Rattus norvegicus ENSRNOG00000014272 ortholog_one2many 14 retrogenes
retro_rnor_1254, retro_rnor_126, retro_rnor_147, retro_rnor_1473, retro_rnor_1509, retro_rnor_1768, retro_rnor_1957, retro_rnor_205, retro_rnor_2183, retro_rnor_233, retro_rnor_2618, retro_rnor_2681, retro_rnor_2719, retro_rnor_451,
Sarcophilus harrisii ENSSHAG00000004756 ortholog_one2one 1 retrogene
retro_shar_775,
Ictidomys tridecemlineatus ENSSTOG00000007901 ortholog_one2one 1 retrogene
retro_itri_1735,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_214 77.24 100.00
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2. retro_sscr_553 76.00 100.00
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3. retro_sscr_679 50.60 66.67
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4. retro_sscr_905 76.80 100.00
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5. retro_sscr_1168 66.13 100.00
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Download FASTA sequences of all ENSSSCG00000005595 retrocopies