RetrogeneDB ID: | retro_rnor_2719 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 9:9795260..9795553(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl35 | ||
Ensembl ID: | ENSRNOG00000014272 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L35 [Source:UniProtKB/Swiss-Prot;Acc:P17078] |
Percent Identity: | 81.37 % |
Parental protein coverage: | 82.11 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVT-GGAASKLSKIRVVRKSIARVLTVINQTQKENL |
MA.IKA.DLRGKK.EELLKQLDDLKVEL.QLRVAKVT.....SK....R...KSIARVLTVINQ.QKENL | |
Retrocopy | MATIKAQDLRGKKEEELLKQLDDLKVELPQLRVAKVT<ASKLSKIRVVR---KSIARVLTVINQIQKENL |
Parental | RKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEK |
RKFYKGKKYKPLDLRP.KTRA.RRRLTKHEEK | |
Retrocopy | RKFYKGKKYKPLDLRPEKTRAVRRRLTKHEEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .15 RPM | 79 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 111 .30 RPM |
SRP017611_liver | 0 .00 RPM | 59 .37 RPM |