RetrogeneDB ID: | retro_rnor_2183 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 5:155476988..155477255(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000026841 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl35 | ||
Ensembl ID: | ENSRNOG00000014272 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L35 [Source:UniProtKB/Swiss-Prot;Acc:P17078] |
Percent Identity: | 87.64 % |
Parental protein coverage: | 72.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKT |
KVTGG.A.KLSKIRVV..SI.R.LTVINQTQKENLRKFYKGKKYKPLDLRP.KT.A.RRRL.KHEEKLKT | |
Retrocopy | KVTGGTAPKLSKIRVVPQSITRDLTVINQTQKENLRKFYKGKKYKPLDLRPMKTGAVRRRLPKHEEKLKT |
Parental | KKQQRKERLYPLRKYAVKA |
KKQQRKERLYPLRK.AVKA | |
Retrocopy | KKQQRKERLYPLRKCAVKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 79 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 111 .30 RPM |
SRP017611_liver | 0 .00 RPM | 59 .37 RPM |