RetrogeneDB ID: | retro_ecab_813 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 4:54796849..54797218(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL35 | ||
Ensembl ID: | ENSECAG00000009389 | ||
Aliases: | None | ||
Description: | ribosomal protein L35 [Source:HGNC Symbol;Acc:10344] |
Percent Identity: | 73.17 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLR |
M.KIK..DL.GKK.EELLKQL.DLKVELS.L.V.KVTG.A.SKLSKI.V...SI..VLTV.NQTQK.NL. | |
Retrocopy | MTKIKV*DLQGKKEEELLKQLNDLKVELSHLCVTKVTGSAVSKLSKI*VAHISITIVLTVVNQTQKKNLK |
Parental | KFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVKA |
KFY.GKKYK.L.L.PKKT.AM...L.KHEENLKTKKQ..KE.LYPL.KYAVKA | |
Retrocopy | KFYEGKKYKSLELWPKKTCAMCCWLSKHEENLKTKKQEQKEWLYPLWKYAVKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .12 RPM | 495 .97 RPM |
SRP021940_cerebellum | 0 .05 RPM | 193 .14 RPM |
SRP021940_embryo | 0 .13 RPM | 329 .15 RPM |
SRP021940_placental_villous | 0 .05 RPM | 224 .58 RPM |
SRP021940_synovial_membrane | 0 .08 RPM | 413 .10 RPM |
SRP021940_testis | 0 .00 RPM | 214 .34 RPM |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_1340 |