RetrogeneDB ID: | retro_fcat_397 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:115658875..115659164(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000030388 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.31 % |
Parental protein coverage: | 81.3 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MAKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTG-GAASKLSKIRVVRKSIARVLTV-INQTQKEN |
MAKIK..DL.G.KKEELLK.L...K...SQL.V.KVT..G...K........KSI..VL...I.QTQKEN | |
Retrocopy | MAKIKPQDLQG-KKEELLK*LDN*KMKISQLCVTKVTD>GIQAKIKVV---HKSITWVLAT<IDQTQKEN |
Parental | L-RKFYKGKKYKPLDLRPKKTRAMRRRLNKHEE |
L.R.FYKGK.YKPL.L.PK...A....LNKHE. | |
Retrocopy | L>REFYKGK*YKPLELQPKEMCARCCWLNKHED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 43 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 165 .30 RPM |
SRP017611_liver | 0 .00 RPM | 79 .15 RPM |