RetrogeneDB ID: | retro_fcat_1790 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F1:56899929..56900259(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000030388 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.54 % |
Parental protein coverage: | 91.06 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | AKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRK |
AKIKA..LRGK..EELL.Q..DLKVELSQL.V...TGG.ASKLSKI..V.KSI.RVLT.I.QTQKENLRK | |
Retrocopy | AKIKAPHLRGKE-EELLEQMGDLKVELSQLCVVEETGGVASKLSKI*AVCKSITRVLTTISQTQKENLRK |
Parental | FYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERL |
FY..KKYKPLDL..K.T.A.R..LNK..ENL.TKKQQ.K..L | |
Retrocopy | FYEDKKYKPLDLWLKNTHAVRALLNK-DENLRTKKQQWKKQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 43 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 165 .30 RPM |
SRP017611_liver | 0 .00 RPM | 79 .15 RPM |