RetrogeneDB ID: | retro_ocun_451 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 11:56248963..56249332(+) | ||
Located in intron of: | ENSOCUG00000005257 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000002996 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.56 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLR |
MAKIK.RDLRGKKKEELLKQLDDLKVELSQLRVAKV.GGAASKLSKIRVVRKSIARVLTVINQTQKENLR | |
Retrocopy | MAKIKSRDLRGKKKEELLKQLDDLKVELSQLRVAKVAGGAASKLSKIRVVRKSIARVLTVINQTQKENLR |
Parental | KFYKGKKYKPLDLRPKKTRAMRRRLNKHEESLKTKKQQRKERLYPLRKYAVKA |
KFYKGKKYKPLDLRPKKTRAM.RRLNKHEESLKTKKQQRKERLYPLRKYAVKA | |
Retrocopy | KFYKGKKYKPLDLRPKKTRAMCRRLNKHEESLKTKKQQRKERLYPLRKYAVKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .28 RPM | 73 .51 RPM |
SRP017611_kidney | 0 .30 RPM | 146 .05 RPM |
SRP017611_liver | 0 .00 RPM | 34 .30 RPM |