RetrogeneDB ID: | retro_eeur_487 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_323716:1063..1412(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL35 | ||
Ensembl ID: | ENSEEUG00000012696 | ||
Aliases: | None | ||
Description: | ribosomal protein L35 [Source:HGNC Symbol;Acc:10344] |
Percent Identity: | 80.49 % |
Parental protein coverage: | 99.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAA-SKLSKIRVVRKSIARVLTVINQTQKENL |
MAKIKARDL.GKKKEE.LKQ....KVELSQL.VAKVTGG.A.SK....R...K.IA.VLTVINQTQKENL | |
Retrocopy | MAKIKARDLGGKKKEEQLKQ---MKVELSQLHVAKVTGGQA>SKI*VVR---KTIAQVLTVINQTQKENL |
Parental | RKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPMRKFAVK |
RKF.KGKKYKPLDLRPKKTRAM.R.LNKHEENLKTKKQQRKER..PMR.FAVK | |
Retrocopy | RKFDKGKKYKPLDLRPKKTRAMCRQLNKHEENLKTKKQQRKERQ*PMRTFAVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 92 .50 RPM |
SRP017611_kidney | 0 .38 RPM | 184 .73 RPM |
SRP017611_liver | 0 .48 RPM | 131 .35 RPM |