RetrogeneDB ID: | retro_ocun_791 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 15:12998357..12998633(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000026464 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000002996 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.44 % |
Parental protein coverage: | 75.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEE |
L.....TGG.AS.LSKIRVV.KSIA.V...I.QTQKENL.KF.K.KK.K.LDL.P.K....R...NK.EE | |
Retrocopy | LAAQRQTGGTASMLSKIRVVHKSIAYVFPAIHQTQKENLKKFHKDKKNKSLDLQPRKIHTVRHQRNKREE |
Parental | SLKTKKQQRKERLYPLRKYAVKA |
.LKTKK.QRK.RL.P..KYAVKA | |
Retrocopy | NLKTKK-QRKVRLHPPCKYAVKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 73 .51 RPM |
SRP017611_kidney | 0 .00 RPM | 146 .05 RPM |
SRP017611_liver | 0 .00 RPM | 34 .30 RPM |