RetrogeneDB ID: | retro_eeur_533 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_340593:12524..12855(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL35 | ||
Ensembl ID: | ENSEEUG00000012696 | ||
Aliases: | None | ||
Description: | ribosomal protein L35 [Source:HGNC Symbol;Acc:10344] |
Percent Identity: | 78.95 % |
Parental protein coverage: | 90.24 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLR |
M.KIKAR.LRGKK.EELLKQ.DDL.VELS.LRVAKVTGG.ASK.S.I.VV..SIA.VLTVINQTQKEN.R | |
Retrocopy | MVKIKARNLRGKK-EELLKQPDDLTVELSWLRVAKVTGGVASKFSEIPVVLNSIA*VLTVINQTQKENRR |
Parental | KFYKGKK-YKPLDLRP-KKTRAMRRRLNKHEENL-KTKKQQRKE |
KFYKGKK..KPLDLRP.KKTRAM..RL.K.EENL.KT.KQ.RKE | |
Retrocopy | KFYKGKK>NKPLDLRP<KKTRAMCCRLIKNEENL>KTQKQ*RKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 92 .50 RPM |
SRP017611_kidney | 0 .00 RPM | 184 .73 RPM |
SRP017611_liver | 0 .00 RPM | 131 .35 RPM |