RetrogeneDB ID: | retro_pabe_3064 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:57176585..57176909(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL35 | ||
Ensembl ID: | ENSPPYG00000019603 | ||
Aliases: | None | ||
Description: | ribosomal protein L35 [Source:HGNC Symbol;Acc:10344] |
Percent Identity: | 81.82 % |
Parental protein coverage: | 89.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDL |
KEELLKQLDDLKVELSQLRVAKVTGGAASKLS.....R..I.RVLTV.NQTQKE.LRKFYKGKKYKPL.L | |
Retrocopy | KEELLKQLDDLKVELSQLRVAKVTGGAASKLS*-DLSRPQIGRVLTVVNQTQKEKLRKFYKGKKYKPLNL |
Parental | RPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVKA |
..KKTRAM..R.NKH.ENLKTKK.Q.KERLY.LRKYAVKA | |
Retrocopy | WLKKTRAMCCRFNKHKENLKTKKRQQKERLY-LRKYAVKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 88 .69 RPM |
SRP007412_cerebellum | 0 .00 RPM | 57 .76 RPM |
SRP007412_heart | 0 .00 RPM | 65 .17 RPM |
SRP007412_kidney | 0 .00 RPM | 170 .74 RPM |
SRP007412_liver | 0 .00 RPM | 141 .90 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3832 |
Pan troglodytes | retro_ptro_2609 |
Gorilla gorilla | retro_ggor_2581 |
Macaca mulatta | retro_mmul_1623 |