RetrogeneDB ID: | retro_chof_1018 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_1844:6410..7152(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSCHOG00000004622 | ||
Aliases: | None | ||
Description: | ribosomal protein S6 [Source:HGNC Symbol;Acc:10429] |
Percent Identity: | 84.86 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG-FPMK-QGVL |
MKLNISFPATGCQKLIE.DDERKL.TFYEK.MATEVAADALGEEWKGYVV..SGGNDKQG.FP......L | |
Retrocopy | MKLNISFPATGCQKLIEADDERKLCTFYEKCMATEVAADALGEEWKGYVVQVSGGNDKQG<FPHE<NSIL |
Parental | THGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRA |
THG.V.LL..KGHSCYRPRRTGERK....RGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVP..LGP.RA | |
Retrocopy | THGCVYLLQRKGHSCYRPRRTGERKCRCARGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPCCLGPRRA |
Parental | SR-RKL--LSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAE |
SR.RKL..LSKEDDVRQYV.RKPLNKE.KKPRTKAPKIQRLVTP.VLQH..R.IALKKQ.TKKNKEE.AE | |
Retrocopy | SRIRKLFSLSKEDDVRQYVMRKPLNKESKKPRTKAPKIQRLVTPCVLQHS-RSIALKKQHTKKNKEEVAE |
Parental | YAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK |
YAKLLAKRMKEAKEKRQEQIAK...LSSL.ASTSKSESSQK | |
Retrocopy | YAKLLAKRMKEAKEKRQEQIAKSWKLSSLTASTSKSESSQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |