Parental gene:

RPS6, ENSCHOG00000004622

Aliases:None
Description:ribosomal protein S6 [Source:HGNC Symbol;Acc:10429]
Organism:Sloth (Choloepus hoffmanni)
Coordinates:GeneScaffold_3698:109896..113543(-)


>ENSCHOG00000004622
ATGAAGCTGAACATCTCCTTCCCAGCCACTGGCTGCCAGAAGCTCATTGAAGTGGACGATGAACGCAAACTTCGTACATT
TTATGAGAAGCGAATGGCCACAGAAGTTGCTGCTGACGCTCTGGGCGAAGAGTGGAAGGGTTACGTTGTCCGAATCAGTG
GTGGAAATGACAAACAAGGTTTCCCCATGAAACAGGGTGTCTTGACCCATGGCCGTGTCCGCCTCCTACTGAGTAAGGGG
CATTCCTGTTATAGACCAAGGAGAACTGGAGAAAGAAAGCGCAAATCTGTTCGGGGTTGCATTGTGGATGCCAATTTGAG
TGTTCTCAACCTGGTTATTGTAAAAAAAGGAGAGAAGGATATTCCTGGACTGACTGATACAACTGTGCCTCGTCGCCTGG
GGCCCAAAAGAGCTAGTAGACGCAAACTTCTCTCTAAAGAAGATGATGTCCGCCAGTATGTTGTGAGAAAGCCCCTGAAC
AAAGAAGGTAAGAAACCCAGGACCAAAGCACCCAAGATTCAGCGTCTTGTTACTCCACGTGTTCTGCAGCATAAACGTCG
GCGTATTGCATTGAAGAAACAGCGTACTAAGAAAAATAAGGAAGAGGCCGCAGAATATGCTAAACTTTTGGCCAAGAGAA
TGAAGGAGGCCAAAGAAAAACGCCAGGAACAGATTGCCAAGAGACGTAGGCTGTCCTCACTGAGAGCTTCTACCTCCAAG
TCTGAGTCCAGTCAAAAATAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017634 possible_ortholog 1 retrogene
retro_acar_20,
Cavia porcellus ENSCPOG00000003750 possible_ortholog 4 retrogenes
retro_cpor_1244, retro_cpor_22, retro_cpor_317, retro_cpor_486,
Dipodomys ordii ENSDORG00000012057 ortholog_one2one 2 retrogenes
retro_dord_37, retro_dord_452,
Loxodonta africana ENSLAFG00000010766 possible_ortholog 4 retrogenes
retro_lafr_1021, retro_lafr_1239, retro_lafr_59, retro_lafr_667,
Myotis lucifugus ENSMLUG00000007588 ortholog_one2one 27 retrogenes
retro_mluc_1041, retro_mluc_1146, retro_mluc_1169, retro_mluc_1393, retro_mluc_1411, retro_mluc_1448, retro_mluc_1472, retro_mluc_1532, retro_mluc_1566, retro_mluc_1593, retro_mluc_1629, retro_mluc_1635, retro_mluc_1723, retro_mluc_1799, retro_mluc_1909, retro_mluc_1928, retro_mluc_1933, retro_mluc_2110, retro_mluc_2129, retro_mluc_490, retro_mluc_493, retro_mluc_514, retro_mluc_557, retro_mluc_652, retro_mluc_678, retro_mluc_722, retro_mluc_830,
Monodelphis domestica ENSMODG00000004095 possible_ortholog 1 retrogene
retro_mdom_301,
Nomascus leucogenys ENSNLEG00000017532 ortholog_one2one 14 retrogenes
retro_nleu_1033, retro_nleu_1333, retro_nleu_1613, retro_nleu_226, retro_nleu_2471, retro_nleu_252, retro_nleu_2536, retro_nleu_2611, retro_nleu_2652, retro_nleu_2655, retro_nleu_2860, retro_nleu_313, retro_nleu_476, retro_nleu_546,
Otolemur garnettii ENSOGAG00000016254 ortholog_one2one 21 retrogenes
retro_ogar_1208, retro_ogar_1222, retro_ogar_1335, retro_ogar_1356, retro_ogar_1359, retro_ogar_1439, retro_ogar_1526, retro_ogar_1531, retro_ogar_1612, retro_ogar_1979, retro_ogar_2174, retro_ogar_2195, retro_ogar_2248, retro_ogar_2264, retro_ogar_2514, retro_ogar_2707, retro_ogar_2853, retro_ogar_3329, retro_ogar_462, retro_ogar_575, retro_ogar_782,
Ochotona princeps ENSOPRG00000012290 possible_ortholog 5 retrogenes
retro_opri_123, retro_opri_642, retro_opri_78, retro_opri_862, retro_opri_895,
Tursiops truncatus ENSTTRG00000001787 ortholog_one2one 11 retrogenes
retro_ttru_1024, retro_ttru_107, retro_ttru_1275, retro_ttru_370, retro_ttru_468, retro_ttru_587, retro_ttru_748, retro_ttru_786, retro_ttru_878, retro_ttru_905, retro_ttru_934,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_chof_193 83.33 97.97
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2. retro_chof_849 72.11 100.00
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3. retro_chof_941 85.60 100.00
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4. retro_chof_1018 84.86 100.00
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5. retro_chof_1101 64.66 52.44
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6. retro_chof_1107 86.17 74.80
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7. retro_chof_1590 74.19 99.59
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8. retro_chof_2036 72.89 90.24
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9. retro_chof_2037 73.39 86.18
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10. retro_chof_2051 97.59 100.00
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11. retro_chof_2188 93.89 91.46
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12. retro_chof_2363 73.82 93.50
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13. retro_chof_2455 93.86 91.46
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14. retro_chof_2486 75.19 52.85
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15. retro_chof_2608 80.00 84.96
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Download FASTA sequences of all ENSCHOG00000004622 retrocopies