RetrogeneDB ID:

retro_ttru_1024

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_100287:34917..35338(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS6
Ensembl ID:ENSTTRG00000001787
Aliases:None
Description:ribosomal protein S6 [Source:HGNC Symbol;Acc:10429]


Retrocopy-Parental alignment summary:






>retro_ttru_1024
GTGTTCAACTGGGTCACCATAAAGAAAGGGGAGAAGGATATTCCTGGACTCACTGATACTACTGTGCCTCGTTATCTGGG
GCCCAAAAGAGCTAGCAGAATCTGCAAGCTTTTCAATCTCTCTAAAGAAGACGATGTCTGCCAGTATCTTGTGAGAAAGC
TCATAAACAAACAAGGTAAGAAACCTAGGACAAAAGTACCCAGGATTCAGCATCTTGTTACTCCACGTGTTCTGCAACAA
AAACATTGGCACATTGCTCTGAAGGAACAGCAACTAAGAAAAATAAGGAAAAGGCTACAGAATATACTAAACTTTTGGCC
AGGGGAATGAAGGAGGCCAAAGAAAAATGCCAGGAACAGACTGCCAAGAGTCAAGGCTGTCCTCTCTGAGAGCTTCTACT
TCTAAGTCTGAGTCTAGTCAA

ORF - retro_ttru_1024 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.62 %
Parental protein coverage: 56.85 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQ
V.N.V..KKGEKDIPGLTDTTVPR.LGPKRASRI.KLFNLSKEDDV.QY.VRK..NK.GKKPRTK.P.IQ
RetrocopyVFNWVTIKKGEKDIPGLTDTTVPRYLGPKRASRICKLFNLSKEDDVCQYLVRKLINKQGKKPRTKVPRIQ
ParentalRLVTPRVLQHKRRRIALKKQR-TKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR-RLSSLRASTSKSE
.LVTPRVLQ.K...IALK.Q..TKKNKE.A.EY.KLLA..MKEAKEK.QEQ.AK...RLSSLRASTSKSE
RetrocopyHLVTPRVLQQKHWHIALKEQQ<TKKNKEKATEYTKLLARGMKEAKEKCQEQTAKSQ<RLSSLRASTSKSE
ParentalSSK
SS.
RetrocopySSQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1024 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1024 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 105 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000176341 retrocopy
Choloepus hoffmanni ENSCHOG0000000462215 retrocopies
Cavia porcellus ENSCPOG000000037504 retrocopies
Dipodomys ordii ENSDORG000000120572 retrocopies
Loxodonta africana ENSLAFG000000107664 retrocopies
Myotis lucifugus ENSMLUG0000000758827 retrocopies
Monodelphis domestica ENSMODG000000040951 retrocopy
Nomascus leucogenys ENSNLEG0000001753214 retrocopies
Otolemur garnettii ENSOGAG0000001625421 retrocopies
Ochotona princeps ENSOPRG000000122905 retrocopies
Tursiops truncatus ENSTTRG00000001787 11 retrocopies



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