RetrogeneDB ID: | retro_chof_2608 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_9005:10273..10906(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSCHOG00000004622 | ||
Aliases: | None | ||
Description: | ribosomal protein S6 [Source:HGNC Symbol;Acc:10429] |
Percent Identity: | 80. % |
Parental protein coverage: | 84.96 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | EVAADALGEEWKGYVVRISGG-NDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD |
EVA.DALGE.WKGY.V.ISGG.N.KQ.FPMK.GVLTHGRV.LL.SKGHSCY.PRRTGERK.KSV..CIVD | |
Retrocopy | EVAVDALGEDWKGYIV*ISGG<NGKQDFPMK*GVLTHGRVCLLQSKGHSCY*PRRTGERKCKSVWSCIVD |
Parental | ANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASR-RKL--LSKEDDVRQYVVRKP-LNKEGKKPRTK |
A.LSVLNLVIV..G.KDIPGLTD.TVP..LGPKRA.R..KL...SKEDDV.QYVVRKP..NKEGKK.RTK | |
Retrocopy | ASLSVLNLVIVEEGKKDIPGLTDPTVPHCLGPKRARRIHKLFNFSKEDDVCQYVVRKP<SNKEGKKLRTK |
Parental | APKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAK-EKRQEQIAKRRRLSSLRAST |
APKIQ.LVTP.VLQHK...IALKK.RTKKNKEEA.E..KLLAKRMKEAK.EK.QEQ.AKRRRLSSLRAST | |
Retrocopy | APKIQHLVTPCVLQHKCWHIALKK*RTKKNKEEATEHGKLLAKRMKEAK<EKCQEQTAKRRRLSSLRAST |
Parental | SKSES |
SKSES | |
Retrocopy | SKSES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |