RetrogeneDB ID:

retro_ggor_2984

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:X:21662699..21663151(-)
Located in intron of:ENSGGOG00000013768
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RARRES2
Ensembl ID:ENSGGOG00000011158
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2984
ATGCAGTAGCTGCTGATCCTGCTGGCCCTATGGCTGGGCACCAGGGGATCAGGCAGGGCTGAGCTCCTAAGGGCCTAGCA
GCAGAGCCTGCAGGTACCCTGGGGAAATTCCATAAGCATCCACTTATGCAGTGAGCCTTCACGGAGACCAATATGAGCAG
TGCTATGGATACACTCTCCCCAGCAGGGAACTTTGTGAGGCTAGAATTTAAGCTCCAGTATATAAATTTCTGCAAGAAGA
ATCCTGAGTGCAAAGTCAAGTCCAGTGGAAAGAAGCAGAAATGCCTGGCCTACATCAAACTTGAGGATGAAGTTTTGGGC
CAGATGGTCCATTGCCCCATACAGATGCAGGATTGACAGGAGCCTGAAAAGCACCAGGAGATCCAGAGCAGTAGAGTGGA
GCAAGGCAGCCATGACCCTCACAGCTACTACTTCCCTGGACAATTTGCCTTC

ORF - retro_ggor_2984 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 59.24 %
Parental protein coverage: 95.71 %
Number of stop codons detected: 4
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMRRLLIPLALWLGAVGVGIAELTEAQRRGLQV-ALEEFHKHPPVQWAFQETSVESAVDTPFPAGIFVRLE
M..LLI.LALWLG..G.G.AEL..A....LQV..L..FHKHP..Q.AF.ET...SA.DT..PAG.FVRLE
RetrocopyMQ*LLILLALWLGTRGSGRAELLRA*QQSLQV<TLGKFHKHPLMQ*AFTETNMSSAMDTLSPAGNFVRLE
ParentalFKLQQTSCRKRDWKKPECKVRPNGRKRKCLACIKLGSEDKVLGRLVHCPIETQVLREAEEHQETQCLRVQ
FKLQ.....K...K.PECKV...G.K.KCLA.IKL..ED.VLG..VHCPI..Q...E.E.HQE.Q..RV.
RetrocopyFKLQYINFCK---KNPECKVKSSGKKQKCLAYIKL--EDEVLGQMVHCPIQMQD*QEPEKHQEIQSSRVE
ParentalRAGEDPHSFYFPGQFAF
....DPHS.YFPGQFAF
RetrocopyQGSHDPHSYYFPGQFAF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 9 .40 RPM
SRP007412_cerebellum 0 .04 RPM 8 .35 RPM
SRP007412_heart 0 .00 RPM 8 .16 RPM
SRP007412_kidney 0 .00 RPM 26 .25 RPM
SRP007412_liver 0 .00 RPM 421 .36 RPM
SRP007412_testis 0 .00 RPM 49 .83 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2984 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2984 has 1 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Callithrix jacchus retro_cjac_4141

Parental genes homology:
Parental genes homology involve 7 parental genes, and 79 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000103225 retrocopies
Homo sapiens ENSG0000010653813 retrocopies
Gorilla gorilla ENSGGOG00000011158 1 retrocopy
retro_ggor_2984 ,
Macaca mulatta ENSMMUG000000052324 retrocopies
Nomascus leucogenys ENSNLEG0000000136218 retrocopies
Pongo abelii ENSPPYG0000001816628 retrocopies
Pan troglodytes ENSPTRG0000001985410 retrocopies



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