RetrogeneDB ID: | retro_mmul_1555 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 20:30329908..30330254(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000029150 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RARRES2 | ||
Ensembl ID: | ENSMMUG00000005232 | ||
Aliases: | None | ||
Description: | retinoic acid receptor responder protein 2 precursor [Source:RefSeq peptide;Acc:NP_001253612] |
Percent Identity: | 63.56 % |
Parental protein coverage: | 71.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | AFQETGVDSAVDTHFPAGIFVRLEFKLQQTSCRKRDWKKPECKVRPNGRKRKCLACIKLGSEGKVLGRMV |
AF.ET.VD.AVDT.F.AG.FV.LEFKL..T...K..W.K..CKV.P.GRK.KCLAC..LGS..KV...M. | |
Retrocopy | AFRETSVDGAVDTPFLAGTFVTLEFKLGRTNGQKKEWMKLQCKVQPKGRKQKCLACVTLGSRDKVPCWMS |
Parental | HCPIETQVLREPEEHQETQCIRVQRA-GEDP-HSFYFPGQFAFSKALP |
HC..ETQ..RE.EE.QETQC..V.RA.GEDP.HS..FP.QFAFSKA.P | |
Retrocopy | HCSVETQAQRESEELQETQCSLVERA<GEDP<HSYCFPAQFAFSKARP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 5 .71 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .74 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .65 RPM |
SRP007412_heart | 0 .00 RPM | 19 .49 RPM |
SRP007412_kidney | 0 .00 RPM | 24 .76 RPM |
SRP007412_liver | 0 .00 RPM | 559 .28 RPM |
SRP007412_testis | 0 .11 RPM | 5 .39 RPM |