RetrogeneDB ID: | retro_mmul_2378 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 9:647028..647289(+) | ||
Located in intron of: | ENSMMUG00000002080 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RARRES2 | ||
Ensembl ID: | ENSMMUG00000005232 | ||
Aliases: | None | ||
Description: | retinoic acid receptor responder protein 2 precursor [Source:RefSeq peptide;Acc:NP_001253612] |
Percent Identity: | 56.18 % |
Parental protein coverage: | 54.6 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | QQTSCRKRDWKKPECKVRPNGRKRKCLACIKLGSEGKVLGRMVHCPIETQVLREPEEHQETQCIRVQRAG |
.Q.S.R..DWKKP.CKV.P..RK.KCL.C.KL..E.KVLG..VHCP.ETQ...EPE.HQE..C.R..RA. | |
Retrocopy | RQKSGRRQDWKKPKCKVQPEARKQKCLTCVKLRCEEKVLGK-VHCPAETQTR*EPEKHQEARCSRSERAL |
Parental | EDPHSFYFPGQFAFSKALP |
..P.....P..FA.SKA.P | |
Retrocopy | RTPRQL-LPA*FASSKAWP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 5 .71 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 16 .74 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .65 RPM |
SRP007412_heart | 0 .12 RPM | 19 .49 RPM |
SRP007412_kidney | 0 .35 RPM | 24 .76 RPM |
SRP007412_liver | 0 .28 RPM | 559 .28 RPM |
SRP007412_testis | 0 .00 RPM | 5 .39 RPM |