RetrogeneDB ID: | retro_pabe_3604 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | Un:61617045..61617409(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RARRES2 | ||
Ensembl ID: | ENSPPYG00000018166 | ||
Aliases: | None | ||
Description: | Retinoic acid receptor responder protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5R551] |
Percent Identity: | 64.06 % |
Parental protein coverage: | 75.46 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | HPPVQW-AFQETSVESAVDTPFPAGIFVRLEFKLQQTSC-RKRDWKKPECKVRPNGRKRKCLACIKLGSE |
HPP.QW.AF.ETSV...VD.PFP.G.FVRLEFKL.QT...RK.DWKKP.CKV.P.GRKRKCL...KLGSE | |
Retrocopy | HPPMQW<AFRETSVDGDVDMPFPVGTFVRLEFKLRQTGS<RKKDWKKPKCKVQPKGRKRKCLVYVKLGSE |
Parental | DKVLGRLVHCPIETQVLREPEEHQ-ETQCIRVQRA-GEDP-HSFYFPGQFAFSKALPR |
.KVLG.L.H.PIETQV..EPEE.Q..TQC.R...A.G..P.HS..F..QFAF....P. | |
Retrocopy | EKVLGLLGHWPIETQVRWEPEEQQ<GTQCNREELA<GDYP<HSYCFLAQFAFPRPGPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .81 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .03 RPM |
SRP007412_heart | 0 .00 RPM | 7 .53 RPM |
SRP007412_kidney | 0 .00 RPM | 181 .38 RPM |
SRP007412_liver | 0 .00 RPM | 384 .91 RPM |