RetrogeneDB ID: | retro_ptro_1098 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 16:44922847..44923160(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RARRES2 | ||
Ensembl ID: | ENSPTRG00000019854 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.31 % |
Parental protein coverage: | 65.64 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | AQRRGLQVALEE-FHKHPPVQWAFQETSVESAVDTPFPAGIFVRLEFKLQQTSCRKRDWKKPECKVRPNG |
AQR.GLQVALEE..H.H...QWAFQETSV..AV.TPFPAG.FVRLEFKL..T.CRK..WKKPECKV.P.G | |
Retrocopy | AQRWGLQVALEE<IHSH--LQWAFQETSVDRAVETPFPAGTFVRLEFKLLKTRCRKKNWKKPECKVQPKG |
Parental | RKRKCLACIKLGSEDKVLGRLV-HCPIETQVLREAEEHQ |
.KRKCLAC.KLGSEDKV....V.HCPIETQ.LR..EEHQ | |
Retrocopy | SKRKCLACVKLGSEDKVPAWMV<HCPIETQALRDPEEHQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 8 .65 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .30 RPM |
SRP007412_heart | 0 .00 RPM | 4 .05 RPM |
SRP007412_kidney | 0 .00 RPM | 119 .75 RPM |
SRP007412_liver | 0 .00 RPM | 623 .85 RPM |
SRP007412_testis | 0 .00 RPM | 4 .22 RPM |