RetrogeneDB ID:

retro_mmul_1993

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:5:182081999..182082263(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RARRES2
Ensembl ID:ENSMMUG00000005232
Aliases:None
Description:retinoic acid receptor responder protein 2 precursor [Source:RefSeq peptide;Acc:NP_001253612]


Retrocopy-Parental alignment summary:






>retro_mmul_1993
AGACAGAGAAGTGGCCGGAGGCAGGACTGGAAGAAACCCAAGTGCAAAGTCCAGCCCAAGGGCAGGAAGCAGAAATGCCT
GACCTGCGTCAAACTGCGCTGTGAGGATAAGGTTCTGGGCAGGATGGTTCACTGCCCTGCAGAGACGCAGACTCGGCGGG
AGCCTGAGGAGCAGCACGAGGCCAGGTGCAGTAGCTCGGAGCGGGCGCTGAGCACCCCACGACTGCTGCTTCCGGCGCAG
TTCGCCTCCTCCAAGGCCCGGCCC

ORF - retro_mmul_1993 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 59.55 %
Parental protein coverage: 54.6 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalQQTSCRKRDWKKPECKVRPNGRKRKCLACIKLGSEGKVLGRMVHCPIETQVLREPEEHQETQCIRVQRAG
.Q.S.R..DWKKP.CKV.P.GRK.KCL.C.KL..E.KVLGRMVHCP.ETQ..REPEE..E..C....RA.
RetrocopyRQRSGRRQDWKKPKCKVQPKGRKQKCLTCVKLRCEDKVLGRMVHCPAETQTRREPEEQHEARCSSSERAL
ParentalEDPHSFYFPGQFAFSKALP
..P.....P.QFA.SKA.P
RetrocopySTPR-LLLPAQFASSKARP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 5 .71 RPM
SRP007412_brain_prefrontal_cortex 0 .00 RPM 16 .74 RPM
SRP007412_cerebellum 0 .00 RPM 6 .65 RPM
SRP007412_heart 0 .00 RPM 19 .49 RPM
SRP007412_kidney 0 .00 RPM 24 .76 RPM
SRP007412_liver 0 .00 RPM 559 .28 RPM
SRP007412_testis 0 .00 RPM 5 .39 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1993 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1993 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_1993 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 7 parental genes, and 79 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000103225 retrocopies
Homo sapiens ENSG0000010653813 retrocopies
Gorilla gorilla ENSGGOG000000111581 retrocopy
Macaca mulatta ENSMMUG00000005232 4 retrocopies
Nomascus leucogenys ENSNLEG0000000136218 retrocopies
Pongo abelii ENSPPYG0000001816628 retrocopies
Pan troglodytes ENSPTRG0000001985410 retrocopies



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