RetrogeneDB ID: | retro_pabe_1382 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 16:30662996..30663360(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RARRES2 | ||
Ensembl ID: | ENSPPYG00000018166 | ||
Aliases: | None | ||
Description: | Retinoic acid receptor responder protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5R551] |
Percent Identity: | 67.19 % |
Parental protein coverage: | 75.46 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | HPPVQW-AFQETSVESAVDTPFPAGIFVRLEFKLQQTSCRKR-DWKKPECKVRPNGRKRKCLACIKLGSE |
HPPVQW.AF.E.SVE.AV.TPFP.G.FVRLEFKL.QT..R.R.DW.KPECKV.P.GRKRKCLACIKLGS. | |
Retrocopy | HPPVQW<AFWEISVEGAVGTPFPDGTFVRLEFKLGQTAARRR<DWMKPECKVQPKGRKRKCLACIKLGS* |
Parental | DKVLGRLV-HCPIETQVLREPEEHQ-ETQCIRVQRAGEDP-HSFYFPGQFAFSKALPR |
DKVLG..V..CPIETQ..REPEE.Q..TQC.R.....ED..HS..FP.QFA.....P. | |
Retrocopy | DKVLGWMV<NCPIETQARREPEELQ<GTQCSR*EPRCEDT<HSYCFPAQFALPRPSPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .81 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .03 RPM |
SRP007412_heart | 0 .00 RPM | 7 .53 RPM |
SRP007412_kidney | 0 .00 RPM | 181 .38 RPM |
SRP007412_liver | 0 .00 RPM | 384 .91 RPM |