RetrogeneDB ID: | retro_pabe_1384 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 16:30812803..30813162(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RARRES2 | ||
Ensembl ID: | ENSPPYG00000018166 | ||
Aliases: | None | ||
Description: | Retinoic acid receptor responder protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5R551] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 74.85 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | HPPVQWAFQETSVESAVDTPFPAGIFVRLEFKLQQTSCRKRDWKKPECKVRPNGRKRKCLACIKLGSEDK |
H...QWAF.ETSV..AVDTPFPAG.FVRLEFK...T.C.K.DWK...CKV.P.GRKRK.LACIK.GSE.K | |
Retrocopy | HSDLQWAF*ETSVDGAVDTPFPAGTFVRLEFKFLKTRCQK-DWKIS*CKVQPKGRKRKSLACIKQGSEGK |
Parental | VLGRLV-HCPIETQVLREPEEHQ-ETQCIRVQRA-GED-PHSFYFPGQFAFSKALP |
V.G..V.HCPIET..L..PEEHQ..TQC..V..A.GED.PHS..FP..FAFSKA.P | |
Retrocopy | VPGQMV<HCPIETHALQDPEEHQ<GTQCSKVEQA<GED<PHSYCFPT*FAFSKARP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .81 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .03 RPM |
SRP007412_heart | 0 .00 RPM | 7 .53 RPM |
SRP007412_kidney | 0 .00 RPM | 181 .38 RPM |
SRP007412_liver | 0 .00 RPM | 384 .91 RPM |