RetrogeneDB ID: | retro_pabe_3727 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:21463339..21463794(-) | ||
Located in intron of: | ENSPPYG00000020178 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RARRES2 | ||
Ensembl ID: | ENSPPYG00000018166 | ||
Aliases: | None | ||
Description: | Retinoic acid receptor responder protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5R551] |
Percent Identity: | 59.49 % |
Parental protein coverage: | 96.32 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | MRRLLIPLALWLGAVGVGVAELTEAQRRGLQV-ALEEFHKHPPVQWAFQETSVESAVDTPFPAGIFVRLE |
M..LLI.LALWLG..G.G.AEL..A...GLQV.....FHKHP..Q.AF.ET...SA.DT..PAG.FVRLE | |
Retrocopy | MQ*LLILLALWLGTMGLGRAELLRA*QQGLQV<TMGKFHKHPLMQ*AFRETNMSSAMDTLSPAGTFVRLE |
Parental | FKLQQTSCRKRDWKKPECKVRPNGRKRKCLACIKLGSEDKVLGRLVHCPIETQVLREPEEHQETQCIRVQ |
FKLQ.TS..K...K.PECKV...G.K.KCLA.IKL..EDKVLG..VHCPI.T.....PE..QE.QC..V. | |
Retrocopy | FKLQYTSFCK---KNPECKVKSSGKKQKCLAYIKL--EDKVLGQTVHCPIQT*D*QVPEKYQEIQCSGVE |
Parental | RAGEDPHSFYFPGQFAFS |
....DPHS..FPGQFAF. | |
Retrocopy | QSSHDPHSYHFPGQFAFA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .81 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .03 RPM |
SRP007412_heart | 0 .00 RPM | 7 .53 RPM |
SRP007412_kidney | 0 .00 RPM | 181 .38 RPM |
SRP007412_liver | 0 .00 RPM | 384 .91 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4792 |
Pan troglodytes | retro_ptro_3188 |
Macaca mulatta | retro_mmul_2554 |