RetrogeneDB ID: | retro_pabe_3559 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | Un:3047099..3047343(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RARRES2 | ||
Ensembl ID: | ENSPPYG00000018166 | ||
Aliases: | None | ||
Description: | Retinoic acid receptor responder protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5R551] |
Percent Identity: | 63.53 % |
Parental protein coverage: | 50.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KRDWKKPECKVRPNGRKRKCLACIKLGSEDKVLGRLV-HCPIETQVLREPEEHQ-ETQCIRVQRAGEDPH |
..DWKKP.CK..P.GRKRKCLAC.KLGSE.KV.G..V.HCP.ETQ..R.PEEHQ..T.C....RA....H | |
Retrocopy | RKDWKKPKCKAQPKGRKRKCLACVKLGSEEKVPGLMV<HCPVETQAGRDPEEHQ<GTLCSSAERAVR-TH |
Parental | SFYFPGQFAFSKALP |
S..FP.QFAFSKA.P | |
Retrocopy | SYCFPAQFAFSKARP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 16 .81 RPM |
SRP007412_cerebellum | 0 .12 RPM | 8 .03 RPM |
SRP007412_heart | 0 .00 RPM | 7 .53 RPM |
SRP007412_kidney | 0 .03 RPM | 181 .38 RPM |
SRP007412_liver | 0 .00 RPM | 384 .91 RPM |