RetrogeneDB ID: | retro_hsap_1680 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 16:34578474..34578900(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000261486 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RARRES2 | ||
Ensembl ID: | ENSG00000106538 | ||
Aliases: | RARRES2, HP10433, TIG2 | ||
Description: | retinoic acid receptor responder (tazarotene induced) 2 [Source:HGNC Symbol;Acc:9868] |
Percent Identity: | 60.27 % |
Parental protein coverage: | 87.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | VGVAELTEAQRRGLQVALEEFHKHPPVQWAFQETSVESAVDTPFPAGIFVRLEFKLQQTSCRKR-DWKKP |
VG...L..A...G............P...AF.E.SV..AVDTPF.AG.FVRLEFKL.QTS.R.R..W.KP | |
Retrocopy | VGAGALSWAELKGPSAGACRWPWRNPPARAFWESSVDGAVDTPFLAGTFVRLEFKLGQTSARRR<EWMKP |
Parental | ECKVRPNGRKRKCLACIKLGSEDKVLGRLVHCPIETQVLREAEEHQETQCLRVQRA-GEDP-HSFYFPGQ |
.CKV.P..RKRKCLAC.KLGSEDKVLGR...C..ETQ..RE.EEHQETQC.R...A.GED..HS..FP.Q | |
Retrocopy | QCKVQPKVRKRKCLACVKLGSEDKVLGRMDDCLTETQAWRESEEHQETQCSRAEWA<GEDT<HSYCFPAQ |
Parental | FAFSKA |
FAFSKA | |
Retrocopy | FAFSKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 38 .90 RPM |
bodymap2_adrenal | 0 .00 RPM | 78 .66 RPM |
bodymap2_brain | 0 .00 RPM | 7 .83 RPM |
bodymap2_breast | 0 .00 RPM | 230 .96 RPM |
bodymap2_colon | 0 .00 RPM | 81 .81 RPM |
bodymap2_heart | 0 .00 RPM | 2 .88 RPM |
bodymap2_kidney | 0 .00 RPM | 44 .61 RPM |
bodymap2_liver | 0 .00 RPM | 190 .66 RPM |
bodymap2_lung | 0 .00 RPM | 209 .11 RPM |
bodymap2_lymph_node | 0 .00 RPM | 72 .40 RPM |
bodymap2_ovary | 0 .00 RPM | 81 .50 RPM |
bodymap2_prostate | 0 .00 RPM | 97 .53 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 1 .93 RPM |
bodymap2_testis | 0 .02 RPM | 34 .11 RPM |
bodymap2_thyroid | 0 .00 RPM | 29 .24 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .04 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1682 |
Pan troglodytes | retro_ptro_1096 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |