RetrogeneDB ID: | retro_mmul_2554 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:19174035..19174487(-) | ||
Located in intron of: | ENSMMUG00000007500 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RARRES2 | ||
Ensembl ID: | ENSMMUG00000005232 | ||
Aliases: | None | ||
Description: | retinoic acid receptor responder protein 2 precursor [Source:RefSeq peptide;Acc:NP_001253612] |
Percent Identity: | 62.42 % |
Parental protein coverage: | 95.71 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MRRLLIPLALWLGAVGVGVAELTEAQRRGLQV-ALEEFHKHPPVQWAFQETGVDSAVDTHFPAGIFVRLE |
M..LLI.LALWLG..G.G.AEL..A...GLQV.AL..FHKHP..Q..F.ET...SA.DT.FPAG.FVRLE | |
Retrocopy | MQ*LLILLALWLGTMGLGRAELLRA*EQGLQV<ALGKFHKHPLMQ*GFRETNMSSAMDTLFPAGTFVRLE |
Parental | FKLQQTSCRKRDWKKPECKVRPNGRKRKCLACIKLGSEGKVLGRMVHCPIETQVLREPEEHQETQCIRVQ |
FKLQ.TS..K...K..ECKV...G.K.KCLA.IKL..E.K.LG.MVHCPI..Q...EPE.HQE.QC.RV. | |
Retrocopy | FKLQYTSFWK---KNSECKVKSSGKKQKCLAYIKL--EDKILGQMVHCPIQLQDGQEPEKHQEIQCSRVE |
Parental | RAGEDPHSFYFPGQFAF |
....DPHS.YFPGQFAF | |
Retrocopy | QTSHDPHSYYFPGQFAF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 5 .71 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 16 .74 RPM |
SRP007412_cerebellum | 0 .06 RPM | 6 .65 RPM |
SRP007412_heart | 0 .00 RPM | 19 .49 RPM |
SRP007412_kidney | 0 .00 RPM | 24 .76 RPM |
SRP007412_liver | 0 .00 RPM | 559 .28 RPM |
SRP007412_testis | 0 .00 RPM | 5 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4792 |
Pan troglodytes | retro_ptro_3188 |
Pongo abelii | retro_pabe_3727 |