RetrogeneDB ID: | retro_pabe_1387 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 16:31341213..31341459(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RARRES2 | ||
Ensembl ID: | ENSPPYG00000018166 | ||
Aliases: | None | ||
Description: | Retinoic acid receptor responder protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5R551] |
Percent Identity: | 57.47 % |
Parental protein coverage: | 51.53 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | RKRDWKKPECKVRPNGRKRKCLA-CIKLGSEDKVLGRLV-HCPIETQVLREPEEHQ-ETQCIRVQRAGED |
R..DWKKP.CKV.P..RK.K.LA...KL.S..K.LG..V.H.PIETQ.....EEHQ..TQC.R..RA... | |
Retrocopy | RQKDWKKPKCKVQPKERKQKFLA<LVKLCSD*KILGWMV<HRPIETQAQWDLEEHQ<GTQCSRAERAVR- |
Parental | PHSFYFPGQFAFSKALP |
.HS..FP.QFAFSKA.P | |
Retrocopy | THSYCFPVQFAFSKAQP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .81 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .03 RPM |
SRP007412_heart | 0 .00 RPM | 7 .53 RPM |
SRP007412_kidney | 0 .00 RPM | 181 .38 RPM |
SRP007412_liver | 0 .00 RPM | 384 .91 RPM |